View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15599_high_6 (Length: 333)
Name: NF15599_high_6
Description: NF15599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15599_high_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 69 - 333
Target Start/End: Complemental strand, 7348329 - 7348065
Alignment:
| Q |
69 |
gtgatgattgtaattgataagatacgtcaggagagggaggtatctccgttggataatcttctgaagattttgaagtatttgaaagggaaatttgaaacta |
168 |
Q |
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| T |
7348329 |
gtgatgattgtaattgataagttacgtcaggagagggaggtatctccgttggataatcttttgaagattttgaagtatttgaaagggaaatttgaaacta |
7348230 |
T |
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| Q |
169 |
tcagagatgacattcaagctgtggaggatagagtcaaattcctccaaaattttctgctggcttatctcaagtcatcaaaatcttcatcttcttagttatt |
268 |
Q |
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| T |
7348229 |
tcagagatgacattcaagctgtggaggatagagtcaagtgcctccaaaattttctgctggcttatctcaagtcatcaaaatcttcatcttcttagttatt |
7348130 |
T |
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| Q |
269 |
atgattatcaatggtttcattttgcttttaatctcttttgaaaagttgcaacttctcgtttatta |
333 |
Q |
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| T |
7348129 |
atgatcatcaatggtttcattttgcttttaatctcttttgaaaagttgcaacttctcgtttatta |
7348065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 329
Target Start/End: Complemental strand, 7365498 - 7365402
Alignment:
| Q |
230 |
ttatctcaagtcatcaaaatcttcatcttcttagttattatgattatcaatggtttcattttgcttttaatctcttttgaaaagttgcaacttctcgttt |
329 |
Q |
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| T |
7365498 |
ttatctcaaatcagcaacatcttcatcttctcagttat---gattatcaatggtttcgttttgcttttaatctcttttgaaatgttgcaacttctggttt |
7365402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 7373369 - 7373321
Alignment:
| Q |
219 |
tttctgctggcttatctcaagtcatcaaaatcttcatcttcttagttat |
267 |
Q |
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| T |
7373369 |
tttctgctggtttatctcaagtcagcaaaatcttcatcttctcagttat |
7373321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 6315347 - 6315307
Alignment:
| Q |
30 |
ccatctgcccaacaagtctccgttgctactaatccacctgt |
70 |
Q |
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| T |
6315347 |
ccatctgcccaacaagtctccgttgctactaatccacctgt |
6315307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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