View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15599_high_8 (Length: 318)
Name: NF15599_high_8
Description: NF15599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15599_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 49031776 - 49031922
Alignment:
| Q |
10 |
aagaatatcaagaaaatgtaaagaacctaccaaatggtttgtgggaggagatacttgaaggccttaattttgtgcaaaatgaaatgggggcctttcttgg |
109 |
Q |
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| T |
49031776 |
aagaatatcaagaaaatgtaaagaacctaccaaatggtttgtgggaggagatacttgaaggccttaattttgtgcaaaatgaaatgggggcctttcttgg |
49031875 |
T |
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| Q |
110 |
gaatccttcaaaacctctcctcgtctctgttcgctctggtgctgctg |
156 |
Q |
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| T |
49031876 |
gaatccttcaaaacctctcctcgtctctgttcgctctggtgctgctg |
49031922 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 49037007 - 49036922
Alignment:
| Q |
150 |
gctgctgcaagcctagcaatcggaaccctgcaaaagagtcctcaaattttcagtttgactaatgaaaatacaaatgtctcattttc |
235 |
Q |
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| T |
49037007 |
gctgccgcaagccttgcaattggaatcctgcaaaagagtattcaaatttttagtttgaatactaaaaatacaaatatctcattttc |
49036922 |
T |
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