View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1559_high_3 (Length: 263)

Name: NF1559_high_3
Description: NF1559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1559_high_3
NF1559_high_3
[»] chr6 (23 HSPs)
chr6 (1-263)||(14027066-14027328)
chr6 (1-208)||(13943024-13943231)
chr6 (1-237)||(14017104-14017340)
chr6 (1-263)||(14112474-14112736)
chr6 (1-208)||(13860830-13861037)
chr6 (1-236)||(13470736-13470971)
chr6 (1-208)||(14086645-14086855)
chr6 (1-236)||(13890820-13891052)
chr6 (128-236)||(14027021-14027129)
chr6 (51-262)||(13873002-13873213)
chr6 (136-236)||(13873231-13873331)
chr6 (136-259)||(13873159-13873282)
chr6 (128-208)||(13471007-13471087)
chr6 (200-263)||(13943041-13943104)
chr6 (128-208)||(14112457-14112537)
chr6 (192-258)||(13470999-13471065)
chr6 (197-263)||(13860954-13861020)
chr6 (128-208)||(14017058-14017141)
chr6 (196-263)||(13890940-13891007)
chr6 (200-263)||(14017150-14017213)
chr6 (197-259)||(14086666-14086728)
chr6 (200-263)||(13470863-13470926)
chr6 (128-164)||(13873295-13873331)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 14027328 - 14027066
Alignment:
Q  1 acctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccatgaa 100  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  14027328 acctaagataccttgatctttcatattgtcattttggaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccaacaa 14027229  T
Q  101 tatcttagatggtttgattcctcatcgacttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaa 200  Q
    | |  ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  14027228 tcttctagatggtttgattcctcatcaacttggaggtctctccaacttgcaatttcttgatctcagccacaattatttggaaggaagcattccatgtcaa 14027129  T
Q  201 cttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaagcatt 263  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14027128 cttggaaatctctccaacttgcaatttcttgatctcagcatcaattatttggaaggaagcatt 14027066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13943231 - 13943024
Alignment:
Q  1 acctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccatgaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  13943231 acctaagataccttgatctttcatattgttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttcctacaa 13943132  T
Q  101 tatcttagatggtttgattcctcatcgacttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaa 200  Q
    | |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13943131 tcttctagatggtttgattcctcatcgacttggagatctctccaacttgcaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaa 13943032  T
Q  201 cttggaaa 208  Q
    ||||||||    
T  13943031 cttggaaa 13943024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14017340 - 14017104
Alignment:
Q  1 acctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccatgaa 100  Q
    |||||||||||||||||||||||  ||   || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||    
T  14017340 acctaagataccttgatctttcaatttgcaatcttggaggacaaattcctattcaattggagtctctttcacatttgaaatacttggatctttccaacaa 14017241  T
Q  101 t-atcttagatggtttgattcctcatcgacttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctca 199  Q
    | |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| ||||||| |||||||||||||||||    
T  14017240 tcatct-agatggtgtgattcctcatcgacttggagatctctccaacttgcaatttcttgatctcaacaccaatgatttggatggaagcattccatctca 14017142  T
Q  200 acttggaaatctctccaacttgcaatttcttgatctca 237  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14017141 acttggaaatctctccaacttgcaatttcttgatctca 14017104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 14112736 - 14112474
Alignment:
Q  1 acctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccatgaa 100  Q
    |||||||| |||||||||||||| ||| ||||||| | |||| ||||||||||| ||||| |||||||||||||||||||||| | ||||||||||  ||    
T  14112736 acctaagaaaccttgatctttcaaattgttattttggcggacgaattcctattccattggggtctctttcacatttgaaatacataaatctttccaacaa 14112637  T
Q  101 tatcttagatggtttgattcctcatcgacttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaa 200  Q
    |    |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||||||||||||||||    
T  14112636 tcgtctagatggtgtgattcctaatcgacttggagatctctccaacttgcaatttcttgatctcaacaataatggtttggaaggaagcattccatctcaa 14112537  T
Q  201 cttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaagcatt 263  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||  ||| ||||||||||||    
T  14112536 cttggaaatctttccaacttgcaatttcttgatctcagcatcaatggttttgaaggaagcatt 14112474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 13860830 - 13861037
Alignment:
Q  1 acctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccatgaa 100  Q
    ||||||||||||||||||||||  ||| | ||||| |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||   |||    
T  13860830 acctaagataccttgatctttctaattgtcattttggaggacaaattcatattcaatttgagtctctttcgcatttgaaatacttgaatctttcgtggaa 13860929  T
Q  101 t-atcttagatggtttgattcctcatcgacttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctca 199  Q
    | ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  13860930 tcatc-tagatggtttgattcctcatcaacttggagatctctccaacttgcaatttcttgatctcagctacaattttttggaaggaagcattccatctca 13861028  T
Q  200 acttggaaa 208  Q
    |||||||||    
T  13861029 acttggaaa 13861037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13470736 - 13470971
Alignment:
Q  1 acctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccatgaa 100  Q
    |||||||||||||||||||||||  ||   || || |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |  ||    
T  13470736 acctaagataccttgatctttcaggttgcaatcttggaggacaaattcctattcaattcgagtctctttctcatttgaaatacttgaatctttcaaacaa 13470835  T
Q  101 tatcttagatggtttgattcctcatcgacttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaa 200  Q
         |||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||| |||||    
T  13470836 ccgtctagatggtgttattcctcatcgacttggagatctctccaacttgcaatttcttgatctcaggaacaatcgtttggaaggaagcattccaactcaa 13470935  T
Q  201 cttggaaatctctccaacttgcaatttcttgatctc 236  Q
    ||||||||||||| | || || ||| ||||||||||    
T  13470936 cttggaaatctcttcgacatggaatatcttgatctc 13470971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 14086855 - 14086645
Alignment:
Q  1 acctaagataccttgatctttcatattcttattttcgagga---caaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccat 97  Q
    |||||||||||||||||||||||||||   |||||  ||||   ||||||||||||||||||||||||||||  |||||||||||||||||||||||       
T  14086855 acctaagataccttgatctttcatattgcaattttgaaggagatcaaattcctattcaattggagtctcttttgcatttgaaatacttgaatctttcatg 14086756  T
Q  98 gaa-tatcttagatggtttgattcctcatcgacttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatc 196  Q
    ||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||     
T  14086755 gaattatc-tagatggtttgattcctcatcaacttggagatctctccaacttgcaatttcttgatctcagcaacaatgacttggaaggaagtattccata 14086657  T
Q  197 tcaacttggaaa 208  Q
    ||||||||||||    
T  14086656 tcaacttggaaa 14086645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13890820 - 13891052
Alignment:
Q  1 acctaagataccttgatctttcatattcttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttgaatctttccatgaa 100  Q
    |||||||||||||||||||||| ||||    |||| |||||||||||||||||||||| ||||| ||||  |||||||||||||||||  |||||   ||    
T  13890820 acctaagataccttgatctttcttattgcggttttggaggacaaattcctattcaatttgagtcactttaccatttgaaatacttgaaaatttccggcaa 13890919  T
Q  101 t-atcttagatggtttgattcctcatcgacttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctca 199  Q
    | ||||  |||||||||||||||||   ||||||| |||||||||||||| ||||||||||||| |||  ||||  ||||||||||||||||||||||||    
T  13890920 tgatctg-gatggtttgattcctca---acttggaaatctctccaacttgcaatttcttgatcttagccgcaatcttttggaaggaagcattccatctca 13891015  T
Q  200 acttggaaatctctccaacttgcaatttcttgatctc 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  13891016 acttggaaatctctccaacttgcaatttcttgatctc 13891052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 14027129 - 14027021
Alignment:
Q  128 acttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaacttggaaatctctccaacttgcaattt 227  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14027129 acttggaaatctctccaacttgcaatttcttgatctcagcatcaattatttggaaggaagcattccatctcaacttggaaatctctccaacttgcaattt 14027030  T
Q  228 cttgatctc 236  Q
    |||||||||    
T  14027029 cttgatctc 14027021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 262
Target Start/End: Original strand, 13873002 - 13873213
Alignment:
Q  51 attcaattggagtctctttcacatttgaaatacttgaatctttccatgaat-atcttagatggtttgattcctcatcgacttggagatctctccaacttg 149  Q
    |||||||| ||||||||| | ||||||||||| |||| |||||||  |||| ||||  ||||||||||||||||||| ||||||| ||||||||||  |     
T  13873002 attcaatttgagtctcttccgcatttgaaatatttgagtctttcctcgaatgatctc-gatggtttgattcctcatcaacttggaaatctctccaatgtt 13873100  T
Q  150 aaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttgatctcaccatcaattatt 249  Q
      |||| ||||||| ||||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |  ||||  ||    
T  13873101 cgatttattgatctaagcaacaatcatttagaaggaagcattccatctaaactcggaaatctctccaacttgcaatttcttgatctcagctacaatcgtt 13873200  T
Q  250 tggaaggaagcat 262  Q
    |||||||||||||    
T  13873201 tggaaggaagcat 13873213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 13873231 - 13873331
Alignment:
Q  136 atctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttgatct 235  Q
    ||||||||||||||||||||||| ||||||  |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13873231 atctctccaacttgaaatttcttcatctcaaaaacaatgatttggaaggaaggattccatcccaacttggaaatctctccaacttgcaatttcttgatct 13873330  T
Q  236 c 236  Q
    |    
T  13873331 c 13873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 13873159 - 13873282
Alignment:
Q  136 atctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaacttggaaatctctccaacttgcaatttcttgatct 235  Q
    |||||||||||||| ||||||||||||||||| |||||  ||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||| ||||    
T  13873159 atctctccaacttgcaatttcttgatctcagctacaatcgtttggaaggaagcataccatcccaacttgaaaatctctccaacttgaaatttcttcatct 13873258  T
Q  236 caccatcaattatttggaaggaag 259  Q
    ||  | |||| |||||||||||||    
T  13873259 caaaaacaatgatttggaaggaag 13873282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 13471007 - 13471087
Alignment:
Q  128 acttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaacttggaaa 208  Q
    ||||||| |||||||||||||| ||||||||||||||||| | ||| ||||||||||||  ||||||||||||||||||||    
T  13471007 acttggaaatctctccaacttgcaatttcttgatctcagctataataatttggaaggaaatattccatctcaacttggaaa 13471087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 13943104 - 13943041
Alignment:
Q  200 acttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaagcatt 263  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  13943104 acttggagatctctccaacttgcaatttcttgatctcagcaacaattatttggaaggaagcatt 13943041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 14112537 - 14112457
Alignment:
Q  128 acttggagatctctccaacttgaaatttcttgatctcagcaacaattatttggaaggaagcattccatctcaacttggaaa 208  Q
    ||||||| |||| ||||||||| |||||||||||||||||| ||||  ||| ||||||||||||||||||||| |||||||    
T  14112537 acttggaaatctttccaacttgcaatttcttgatctcagcatcaatggttttgaaggaagcattccatctcaaattggaaa 14112457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 13470999 - 13471065
Alignment:
Q  192 ccatctcaacttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaa 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |   ||| ||||||||||||    
T  13470999 ccatctcaacttggaaatctctccaacttgcaatttcttgatctcagctataataatttggaaggaa 13471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 13860954 - 13861020
Alignment:
Q  197 tcaacttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaagcatt 263  Q
    |||||||||| |||||||||||||||||||||||||||||| |  ||||| ||||||||||||||||    
T  13860954 tcaacttggagatctctccaacttgcaatttcttgatctcagctacaattttttggaaggaagcatt 13861020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 14017141 - 14017058
Alignment:
Q  128 acttggagatctctccaacttgaaatttcttgatctcagcaacaa---ttatttggaaggaagcattccatctcaacttggaaa 208  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||   |  |||||||||||| ||||||||||||||||||||    
T  14017141 acttggaaatctctccaacttgcaatttcttgatctcagccacaacattggtttggaaggaagaattccatctcaacttggaaa 14017058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 13890940 - 13891007
Alignment:
Q  196 ctcaacttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaagcatt 263  Q
    |||||||||||||||||||||||||||||||||||||||| | |  ||||  ||||||||||||||||    
T  13890940 ctcaacttggaaatctctccaacttgcaatttcttgatcttagccgcaatcttttggaaggaagcatt 13891007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 14017213 - 14017150
Alignment:
Q  200 acttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaagcatt 263  Q
    ||||||| |||||||||||||||||||||||||||||| || |||| ||||||| |||||||||    
T  14017213 acttggagatctctccaacttgcaatttcttgatctcaacaccaatgatttggatggaagcatt 14017150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 14086728 - 14086666
Alignment:
Q  197 tcaacttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaag 259  Q
    |||||||||| |||||||||||||||||||||||||||||| || |||| | |||||||||||    
T  14086728 tcaacttggagatctctccaacttgcaatttcttgatctcagcaacaatgacttggaaggaag 14086666  T

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Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 13470863 - 13470926
Alignment:
Q  200 acttggaaatctctccaacttgcaatttcttgatctcaccatcaattatttggaaggaagcatt 263  Q
    ||||||| ||||||||||||||||||||||||||||||  | ||||  ||||||||||||||||    
T  13470863 acttggagatctctccaacttgcaatttcttgatctcaggaacaatcgtttggaaggaagcatt 13470926  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 13873295 - 13873331
Alignment:
Q  128 acttggagatctctccaacttgaaatttcttgatctc 164  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  13873295 acttggaaatctctccaacttgcaatttcttgatctc 13873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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