View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1559_low_1 (Length: 705)
Name: NF1559_low_1
Description: NF1559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1559_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 1 - 696
Target Start/End: Complemental strand, 32166092 - 32165392
Alignment:
| Q |
1 |
tcttgtttttgtcagaatcaacactctcgctcactatctctgaagtaccaaggacatggaaatccttaactttctacttaaaaaagctacaatggccttt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32166092 |
tcttgtttttgtctgaatcaacactctcgctcactatctctgaagtactaaggacatggaaatccttaactttctacttaaaaaagttacaatggccttt |
32165993 |
T |
|
| Q |
101 |
attctataccgaactcagagtgtaacagcggattggtggaagaaatgctcacaagacaataatgtttggttgggactgcctcggagacaagacaaagtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32165992 |
attctataccgaactcagagtgtaacagcggattggtggaagaaatgctcgtaagacaataatgtttggttgggactgcctcggagacaagacaaagtcc |
32165893 |
T |
|
| Q |
201 |
aatggtagggatgtaatgctgacattctaacgctgaaattaatatatattacttcattaaggtgggtgaaaggtttagaataatacatatcttgagaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32165892 |
aatggtagggatgtaatgctgacattctaacgctgaaattaatatatattacttcattaaggtgggtgaaaggtttagaataatacatatcttgagaggt |
32165793 |
T |
|
| Q |
301 |
gatgatagacctaaaaatgaagtatcaagttcagttggaaacaaccttggtatatcacatgagacactttcccttcttagcaattgcctattattataat |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32165792 |
gatgatagacctaaagatgaagtatcaagttcagttggaaacaaccttggtatatcacatgagacactttcccttcttagcaattgcctattattataat |
32165693 |
T |
|
| Q |
401 |
tataggggtccatattatttaatannnnnnnggtacagaggtccagattcaaaaca--tgtgtgtgtatttgattttcatt---tatatattattgaggt |
495 |
Q |
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| T |
32165692 |
tataggggtccatattatttaatatttttttggtacagaggtccagattcaaaacatgtgtgtgtgtatttgattttcatttactatatattattgaggt |
32165593 |
T |
|
| Q |
496 |
ggatggactgtgtccacagcattcataggggctttgaccagttttatctccaacacttgttccctcatcatcaaatggcaaagaaacatgtcaaatacta |
595 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32165592 |
ggattgactgtgtccacagcatccataggggctttgaccagttttatctccaacacttgttccctcatcatcaaatggcaaagaaacatgtcaaatacta |
32165493 |
T |
|
| Q |
596 |
cgtggtatgtttgcttatttatttaactgttaactgtatttgttattattactgtacnnnnnnncatagctgttgtgtgaatctgagtaatatgatgatg |
695 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32165492 |
cgtggtatgtttgcttatttatttaactgttaactgtatttgttattattactgtacaaaaaaacatagctgttgtgtgaatctgagtaatatgatgatg |
32165393 |
T |
|
| Q |
696 |
t |
696 |
Q |
| |
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| |
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|
| T |
32165392 |
t |
32165392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 569 - 605
Target Start/End: Complemental strand, 27325408 - 27325372
Alignment:
| Q |
569 |
aatggcaaagaaacatgtcaaatactacgtggtatgt |
605 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||| |
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| T |
27325408 |
aatggcaaagaaacctgtcaagtactacgtggtatgt |
27325372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 569 - 605
Target Start/End: Complemental strand, 27350464 - 27350428
Alignment:
| Q |
569 |
aatggcaaagaaacatgtcaaatactacgtggtatgt |
605 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||||| |
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| T |
27350464 |
aatggcaaagaaacatgtcaagtactacggggtatgt |
27350428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 569 - 605
Target Start/End: Complemental strand, 32169316 - 32169280
Alignment:
| Q |
569 |
aatggcaaagaaacatgtcaaatactacgtggtatgt |
605 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
32169316 |
aatggcaaagaaacctgtgaaatactacgtggtatgt |
32169280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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