View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1559_low_2 (Length: 588)

Name: NF1559_low_2
Description: NF1559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1559_low_2
NF1559_low_2
[»] chr4 (18 HSPs)
chr4 (189-535)||(13763851-13764208)
chr4 (3-186)||(13764812-13765001)
chr4 (337-479)||(55151084-55151224)
chr4 (535-576)||(28501386-28501427)
chr4 (538-576)||(4415964-4416002)
chr4 (538-576)||(18882350-18882388)
chr4 (538-576)||(20455181-20455219)
chr4 (538-576)||(46949991-46950029)
chr4 (538-576)||(49793090-49793128)
chr4 (538-576)||(56432517-56432555)
chr4 (539-576)||(25124246-25124283)
chr4 (539-576)||(29520164-29520201)
chr4 (539-576)||(31937076-31937113)
chr4 (538-575)||(32899219-32899256)
chr4 (539-576)||(49373693-49373730)
chr4 (539-576)||(53564356-53564393)
chr4 (539-575)||(37639888-37639924)
chr4 (539-575)||(55563128-55563164)
[»] chr7 (6 HSPs)
chr7 (538-576)||(9140533-9140571)
chr7 (538-576)||(39135094-39135132)
chr7 (538-576)||(2290016-2290054)
chr7 (538-576)||(34012517-34012555)
chr7 (538-575)||(33381574-33381611)
chr7 (535-571)||(1574715-1574751)
[»] chr5 (9 HSPs)
chr5 (538-576)||(27873345-27873383)
chr5 (538-576)||(3028012-3028050)
chr5 (538-576)||(8949811-8949849)
chr5 (538-576)||(21239098-21239136)
chr5 (538-576)||(23260138-23260176)
chr5 (539-576)||(23286474-23286511)
chr5 (539-576)||(43060411-43060448)
chr5 (539-575)||(19571940-19571976)
chr5 (544-576)||(32478143-32478175)
[»] chr3 (8 HSPs)
chr3 (538-576)||(1111648-1111686)
chr3 (538-573)||(6784726-6784761)
chr3 (537-576)||(46845492-46845531)
chr3 (538-576)||(4759351-4759389)
chr3 (538-576)||(24087335-24087373)
chr3 (538-576)||(41392880-41392918)
chr3 (539-576)||(8321925-8321962)
chr3 (540-576)||(1572332-1572368)
[»] chr6 (7 HSPs)
chr6 (536-576)||(13901638-13901678)
chr6 (538-576)||(402621-402659)
chr6 (538-576)||(15498628-15498666)
chr6 (538-576)||(23604459-23604497)
chr6 (538-576)||(25045643-25045681)
chr6 (538-576)||(34915543-34915581)
chr6 (539-576)||(2090658-2090695)
[»] chr8 (7 HSPs)
chr8 (538-576)||(2152240-2152278)
chr8 (538-576)||(12802610-12802648)
chr8 (539-576)||(5162304-5162341)
chr8 (539-576)||(17069844-17069881)
chr8 (539-576)||(17578392-17578429)
chr8 (539-576)||(18641380-18641417)
chr8 (532-576)||(40784884-40784928)
[»] chr2 (5 HSPs)
chr2 (538-576)||(26322293-26322331)
chr2 (539-576)||(2060316-2060353)
chr2 (539-576)||(7116299-7116336)
chr2 (539-576)||(8912874-8912911)
chr2 (539-576)||(28566151-28566188)
[»] chr1 (5 HSPs)
chr1 (538-576)||(7763749-7763787)
chr1 (538-576)||(25509208-25509246)
chr1 (538-576)||(27037268-27037306)
chr1 (538-576)||(42276161-42276199)
chr1 (539-576)||(43456621-43456658)
[»] scaffold0674 (1 HSPs)
scaffold0674 (539-576)||(5151-5188)
[»] scaffold0549 (1 HSPs)
scaffold0549 (539-576)||(10182-10219)
[»] scaffold0240 (1 HSPs)
scaffold0240 (539-576)||(18497-18534)
[»] scaffold0161 (1 HSPs)
scaffold0161 (539-576)||(3438-3475)
[»] scaffold0107 (1 HSPs)
scaffold0107 (539-576)||(48654-48691)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 189 - 535
Target Start/End: Complemental strand, 13764208 - 13763851
Alignment:
Q  189 atgttttaccaataagtttgaagggaagatatttgctagactacaatacagatcatatttcccttcatcatccatttgctacacgttcactacaattgat 288  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||     |||| |||||||||||||||||   || |||||||||| |||||||||     
T  13764208 atgttttacaaataagtttgaagggaagatattttccggactacaa-----atcacatttcccttcatcatcccaatggtacacgttcattacaattgag 13764114  T
Q  289 gttattggtgtaaaatgagagttaga----------------tcgtagcagcgttctactcatctcacaaacacatactctccaatgcaatcttcacacc 372  Q
    ||||||||||||||||||||||||                  || |||||||||||||||| |||||||||||||||||||| ||| |||||||||||      
T  13764113 gttattggtgtaaaatgagagttaacctgtcatgtctccttttcttagcagcgttctactcgtctcacaaacacatactctcaaattcaatcttcacatg 13764014  T
Q  373 atatatagttcctcatatcaattcctaattttttattttaccatacttattgtaacaataatcacaacatgagttgttacagtagcaagcaaaaggtgga 472  Q
     ||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| ||    
T  13764013 gtatattgttcctcatatcaattcctaagtttttattttaccatactaattgtaacaataatcacaacatgacttgttacaatagcaagcaaaaggtcga 13763914  T
Q  473 cgagtttaaagtccattgtggatatgctgccgtcataggtggttgtgttgccgatgccgatga 535  Q
    |||||||| |  |||| ||||||||||  |||||||||||||||| ||||||||||| |||||    
T  13763913 cgagtttacatcccatcgtggatatgcaaccgtcataggtggttgcgttgccgatgctgatga 13763851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 13765001 - 13764812
Alignment:
Q  3 gaaagctgctgtgatcttcattaatttaatgcaatcatcataagctgcacaagaacctaaatacaggtacaccatttaag-------tctgttttacgat 95  Q
    |||||||||||| ||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||       | ||||||| |||    
T  13765001 gaaagctgctgttatcgtcgttaatttactgcaatcatcataagctgtacaagaacctaaatacaggtacactatttaagtaaaatatttgttttaagat 13764902  T
Q  96 gtttattcttgccctatataaccttgtagttatgc--ccacttggcacttgtaaacccctttcttccca-tttcattaagtactttgtaaataa 186  Q
    ||||||||||||||| ||||||||||||| |||||  |||||||||    | |||||||||||| |||| ||||| | ||||||||||||||||    
T  13764901 gtttattcttgccctctataaccttgtagctatgccaccacttggc----gcaaacccctttctacccattttcactgagtactttgtaaataa 13764812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 479
Target Start/End: Original strand, 55151084 - 55151224
Alignment:
Q  337 tcacaaaca-catactctccaatgcaatcttcacaccatatatagttcctcatatcaattcctaattttttattttaccatacttattgtaacaataatc 435  Q
    ||||||||| ||| ||||| ||| |||| ||||||||||||||||||| ||||||||||||||  |||||| ||||||||    | |||||| |||||||    
T  55151084 tcacaaacagcattctctcaaattcaatattcacaccatatatagttcttcatatcaattcctgttttttttttttacca----tcttgtaataataatc 55151179  T
Q  436 ac-aacatgagttgttacagtagcaagcaaaaggtggacgagttt 479  Q
    || |||||| ||||||||| |||||||| | |||||||| |||||    
T  55151180 acaaacatgggttgttacactagcaagccagaggtggacaagttt 55151224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 576
Target Start/End: Complemental strand, 28501427 - 28501386
Alignment:
Q  535 atgatactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  28501427 atgatactacctccgtccctaattataagacccttttgagaa 28501386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 4415964 - 4416002
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  4415964 atactacctccgtccctaattataagacccttttgagaa 4416002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 18882350 - 18882388
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  18882350 atactatctccgtccctaattataagacctttttgagaa 18882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 20455219 - 20455181
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  20455219 atactacctccgtccctaattataagacccttttgagaa 20455181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 46949991 - 46950029
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  46949991 atactacctccgtccctaattataagacccttttgagaa 46950029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 49793090 - 49793128
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  49793090 atactacctccgtccctaattataagacccttttgagaa 49793128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 56432517 - 56432555
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  56432517 atactacctccgtccctaattataagacccttttgagaa 56432555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 25124283 - 25124246
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  25124283 tactacctccgtccctaattataagacccttttgagaa 25124246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 29520201 - 29520164
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  29520201 tactacctccgtccctaattataagacccttttgagaa 29520164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 31937076 - 31937113
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  31937076 tactacctccgtccctaattataagacccttttgagaa 31937113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 32899256 - 32899219
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgaga 575  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  32899256 atactacctccgtccctaattataagacccttttgaga 32899219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 49373730 - 49373693
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  49373730 tactacctccgtccctaattataagacccttttgagaa 49373693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 53564393 - 53564356
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  53564393 tactacctccgtccctaattataagacccttttgagaa 53564356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 37639924 - 37639888
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgaga 575  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  37639924 tactatctccgtccctaattataagactcttttgaga 37639888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 55563164 - 55563128
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgaga 575  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  55563164 tactacctccgtccctaattataagacccttttgaga 55563128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 9140571 - 9140533
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  9140571 atactatctccgtccctaattataagacccttttgagaa 9140533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 39135094 - 39135132
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  39135094 atactacctccgtccctaattacaagacccttttgagaa 39135132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 2290054 - 2290016
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  2290054 atactacctccgtccctaattataagacccttttgagaa 2290016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 34012555 - 34012517
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  34012555 atactacctccgtccctaattataagacccttttgagaa 34012517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 33381611 - 33381574
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgaga 575  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  33381611 atactacctccgtccctaattataagacccttttgaga 33381574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 571
Target Start/End: Original strand, 1574715 - 1574751
Alignment:
Q  535 atgatactatctccgtccctaattacaagaccctttt 571  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  1574715 atgatactacctccgtccctaattataagaccctttt 1574751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 27873383 - 27873345
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  27873383 atactatctccgtccctaattataagacccttttgagaa 27873345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 3028012 - 3028050
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  3028012 atactacctccgtccctaattataagacccttttgagaa 3028050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 8949811 - 8949849
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  8949811 atactacctccgtccctaattataagacccttttgagaa 8949849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 21239098 - 21239136
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  21239098 atactacctccgtccctaattagaagacccttttgagaa 21239136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 23260176 - 23260138
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  23260176 atactacctccgtccctaattataagacccttttgagaa 23260138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 23286511 - 23286474
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  23286511 tactacctccgtccctaattataagacccttttgagaa 23286474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 43060448 - 43060411
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  43060448 tactacctccgtccctaattataagacccttttgagaa 43060411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 575
Target Start/End: Complemental strand, 19571976 - 19571940
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgaga 575  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  19571976 tactacctccgtccctaattataagacccttttgaga 19571940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 576
Target Start/End: Original strand, 32478143 - 32478175
Alignment:
Q  544 tctccgtccctaattacaagacccttttgagaa 576  Q
    |||||||||||||||| ||||||||||||||||    
T  32478143 tctccgtccctaattataagacccttttgagaa 32478175  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 1111686 - 1111648
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  1111686 atactatctccgtccctaattataagacccttttgagaa 1111648  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 573
Target Start/End: Complemental strand, 6784761 - 6784726
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttga 573  Q
    |||||||||||||||||||||| |||||||||||||    
T  6784761 atactatctccgtccctaattataagacccttttga 6784726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 576
Target Start/End: Complemental strand, 46845531 - 46845492
Alignment:
Q  537 gatactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  46845531 gatactacctccgtccctaattataagacccttttgagaa 46845492  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 4759389 - 4759351
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  4759389 atactacctccgtccctaattataagacccttttgagaa 4759351  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 24087373 - 24087335
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  24087373 atactacctccgtccctaattataagacccttttgagaa 24087335  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 41392918 - 41392880
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  41392918 atactacctccgtccctaattataagacccttttgagaa 41392880  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 8321925 - 8321962
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  8321925 tactacctccgtccctaattataagacccttttgagaa 8321962  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 540 - 576
Target Start/End: Original strand, 1572332 - 1572368
Alignment:
Q  540 actatctccgtccctaattacaagacccttttgagaa 576  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  1572332 actaactccgtccctaattataagacccttttgagaa 1572368  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 536 - 576
Target Start/End: Original strand, 13901638 - 13901678
Alignment:
Q  536 tgatactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  13901638 tgatactacctccgtccctaattataagacccttttgagaa 13901678  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 402659 - 402621
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  402659 atactacctccgtccctaattataagacccttttgagaa 402621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 15498628 - 15498666
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  15498628 atactacctccgtccctaattataagacccttttgagaa 15498666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 23604459 - 23604497
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  23604459 atactacctccgtccctaattataagacccttttgagaa 23604497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 25045681 - 25045643
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  25045681 atactacctccgtccctaattataagacccttttgagaa 25045643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 34915581 - 34915543
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  34915581 atactacctccgtccctaattataagacccttttgagaa 34915543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 2090658 - 2090695
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  2090658 tactacctccgtccctaattataagacccttttgagaa 2090695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 2152278 - 2152240
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  2152278 atactacctccgtccctaattataagacccttttgagaa 2152240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 12802610 - 12802648
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  12802610 atactacctccgtccctaattataagacccttttgagaa 12802648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 5162304 - 5162341
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  5162304 tactacctccgtccctaattataagacccttttgagaa 5162341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 17069881 - 17069844
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  17069881 tactacctccgtccctaattataagacccttttgagaa 17069844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 17578392 - 17578429
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  17578392 tactacctccgtccctaattataagacccttttgagaa 17578429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 18641417 - 18641380
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  18641417 tactacctccgtccctaattataagacccttttgagaa 18641380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 532 - 576
Target Start/End: Original strand, 40784884 - 40784928
Alignment:
Q  532 atgatgatactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| |||||| ||||||||||||||| |||||| |||||||||    
T  40784884 atgataatactacctccgtccctaattataagacctttttgagaa 40784928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 26322331 - 26322293
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  26322331 atactacctccgtccctaattataagacccttttgagaa 26322293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 2060316 - 2060353
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  2060316 tactacctccgtccctaattataagacccttttgagaa 2060353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 7116336 - 7116299
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  7116336 tactacctccgtccctaattataagacccttttgagaa 7116299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 8912911 - 8912874
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  8912911 tactacctccgtccctaattataagacccttttgagaa 8912874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 28566151 - 28566188
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  28566151 tactacctccgtccctaattataagacccttttgagaa 28566188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 7763787 - 7763749
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  7763787 atactacctccgtccctaattataagacccttttgagaa 7763749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 25509208 - 25509246
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  25509208 atactacctccgtccctaattataagacccttttgagaa 25509246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Original strand, 27037268 - 27037306
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  27037268 atactacctccgtccctaattataagacccttttgagaa 27037306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 42276199 - 42276161
Alignment:
Q  538 atactatctccgtccctaattacaagacccttttgagaa 576  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  42276199 atactacctccgtccctaattataagacccttttgagaa 42276161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 43456658 - 43456621
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  43456658 tactacctccgtccctaattataagacccttttgagaa 43456621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 5151 - 5188
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  5151 tactacctccgtccctaattataagacccttttgagaa 5188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Complemental strand, 10219 - 10182
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  10219 tactacctccgtccctaattataagacccttttgagaa 10182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 18497 - 18534
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  18497 tactacctccgtccctaattataagacccttttgagaa 18534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 3438 - 3475
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  3438 tactacctccgtccctaattataagacccttttgagaa 3475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 576
Target Start/End: Original strand, 48654 - 48691
Alignment:
Q  539 tactatctccgtccctaattacaagacccttttgagaa 576  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  48654 tactacctccgtccctaattataagacccttttgagaa 48691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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