View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15600_high_1 (Length: 399)
Name: NF15600_high_1
Description: NF15600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15600_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 82 - 264
Target Start/End: Original strand, 40903191 - 40903373
Alignment:
| Q |
82 |
actagtagcattgcaaagcaacaaacaacttactactcacccattcgattccattctaaattttctgttcattcatcatgtcaaacactgctggtcagat |
181 |
Q |
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| T |
40903191 |
actagtagcattgcaaagcaacaaacaacttactactcacccattcgattccattctaaattttctgttcattcatcatgtccaacactgctggtcagat |
40903290 |
T |
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| Q |
182 |
catcaagtgtagaggtaccatctatttatctcaaattttgttttgatcttgttttctagaatattttaatcatcgatccatcc |
264 |
Q |
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| T |
40903291 |
catcaagtgtagaggtaccatctatttatctcaaattttgttttgatcttgttttctagaatattttaatcatcgatccatcc |
40903373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 40903443 - 40903505
Alignment:
| Q |
322 |
cactgaattatgtgattttcttaactgaatcccttgtgtccggtgtttgtattcgtgtttcat |
384 |
Q |
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| T |
40903443 |
cactgaattatgtgattttcttaactgaatcccttgtgtccggtgtttgtactcgtgtttcat |
40903505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 40903131 - 40903171
Alignment:
| Q |
17 |
actatgcacctataaaggtcactgtcacgtagttagttcca |
57 |
Q |
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| T |
40903131 |
actatgcacctataaaggtcactgacacgtagttagttcca |
40903171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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