View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15600_high_2 (Length: 386)
Name: NF15600_high_2
Description: NF15600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15600_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 8724763 - 8725124
Alignment:
| Q |
10 |
gaagaaatttgagaaaaataccgaagaggagctggatacaatgatatgtgacgaaggggagtcgagtagacacatgagctcttactacgaaaaccaagaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8724763 |
gaagaaatttgagaaaaataccgaagaggagctggatacaatgatatgtgacgaaggggagtcgagtagacacatgagttcttactacgaaaaccaagaa |
8724862 |
T |
|
| Q |
110 |
acagctcaaggaatttcagatgtaagcagttcatccttgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724863 |
acagctcaaggaatttcagatgtaagcagttcatccttgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaac |
8724962 |
T |
|
| Q |
210 |
ttatacttgttttatatttgtttcaggttataagtggtactttgccagaaataaatatgc-----atatttgaggaacctttccaagcagacaaatactt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724963 |
ttatacttgttttatatttgtttcaggttttaagtggtactttgccagaaataaatatgcaatcaatatttgaggaacctttccaagcagacaaatactt |
8725062 |
T |
|
| Q |
305 |
tccctactctactcaacaatcttcaatctatgaaaatgagccggaactattattctcaaacg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8725063 |
tccctactctactcaacaatcttcaatctatgaaaatgagccggaactattattctcaaacg |
8725124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 8744604 - 8744962
Alignment:
| Q |
10 |
gaagaaatttgagaaaaataccgaagaggagctggatacaatgatatgtgacgaaggggagtcgagtagacacatgagctcttactacgaaaaccaagaa |
109 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
8744604 |
gaagaaagctgagaaaaatactgaagaggaattggatacaatgatatgtgatgtaggggagtcaagtagacacatgagctctcactacgaaaatcaagaa |
8744703 |
T |
|
| Q |
110 |
acagctcaaggaatttcagatgtaagcagttcatccttgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaac |
209 |
Q |
| |
|
||| ||||||||||| ||||||| ||||||||||||||||||||||| ||| | |||| |||| ||||||| || ||||||||||||||| ||||| |
|
|
| T |
8744704 |
acattagaaggaatttcaaatgtaagaagttcatccttgatagaaattttgaaaacaaagttttggctttacacaatttcacatgaaacatgctaagaac |
8744803 |
T |
|
| Q |
210 |
ttatacttgtttt-atatttgtttcaggttataagtggtactttgccagaaataaatatg-----catatttgaggaacctttccaagcagacaaatact |
303 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||| ||||| ||||| |||| | ||| |||||||||||||||| ||||||||||||||| | |
|
|
| T |
8744804 |
ttatacttgttttaacatttgtttcagg---taagtagtactatgccaaaaattagaatggaatcaatatttgaggaaccttaccaagcagacaaatatt |
8744900 |
T |
|
| Q |
304 |
ttccctactctactcaacaatcttcaatctatgaaaatgagccggaactattattctcaaac |
365 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
8744901 |
ttcccttctctactcaacaatcttcaatctatgaaaatgagcgggaagtatatttctcaaac |
8744962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 8691322 - 8691463
Alignment:
| Q |
10 |
gaagaaatttgagaaaaataccgaagaggagctggatacaatgatatgtgacgaaggggagtcgagtagacacatgagctcttactacgaaaaccaagaa |
109 |
Q |
| |
|
||||||| ||||||||| | |||||||| | |||| |||||||||||| ||||||||| | ||| |||||||||| || | ||||||| |||||| |
|
|
| T |
8691322 |
gaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaaggggagcctagtcgacacatgagttccgatcacgaaaatcaagaa |
8691421 |
T |
|
| Q |
110 |
acagctcaaggaatttcagatgtaagcagttcatccttgata |
151 |
Q |
| |
|
|||| | |||||||| | |||||||| | ||||| ||||||| |
|
|
| T |
8691422 |
acagttgaaggaattcctgatgtaaggatttcattcttgata |
8691463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 8706133 - 8706209
Alignment:
| Q |
149 |
atagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttata |
225 |
Q |
| |
|
||||||||||| | | | |||| |||| |||| |||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8706133 |
atagaaattttgagaacaaagttttggatttaagcctttctacatgaaacatgctgagaacttatatttgttttata |
8706209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 8691535 - 8691584
Alignment:
| Q |
205 |
agaacttatacttgttttatatttgtttcaggttataagtggtactttgc |
254 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
8691535 |
agaacttagacttgtttgttatttgtttcaggtaataagtggtaccttgc |
8691584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University