View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15600_high_5 (Length: 297)
Name: NF15600_high_5
Description: NF15600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15600_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 40579203 - 40578932
Alignment:
| Q |
18 |
atgccaccattttgttggaaaaaatgttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacga |
117 |
Q |
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| T |
40579203 |
atgccaccattttgttggaaaaaatgttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacga |
40579104 |
T |
|
| Q |
118 |
ggcttacactgacacctgaacataaagaaatggaaacataattattttcttgttgttctgctttgttgatgtttcaagtcaacttcatgtatcctaataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40579103 |
ggcttacactgacacctgaacataaagaaatggaaacataattattttcttgttgttctgctttgttgatgtttcaagtcaacttcatgtatcctaataa |
40579004 |
T |
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| Q |
218 |
attagtcaaaatctcaaaatgctactctggtcttgaaggaccgagtacctttggtaaatgaatttcatttca |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
40579003 |
attagtcaaaatctcaaaatgctactctggtcttgaaggactgagtacctttggtaaatgaatttcagttca |
40578932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 40572744 - 40572501
Alignment:
| Q |
20 |
gccaccattttgttggaaaaaatgttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgagg |
119 |
Q |
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| T |
40572744 |
gccaccattttgttgaaaaaaatgttcttgaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgagg |
40572645 |
T |
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| Q |
120 |
cttacactgacacctgaacataaagaaatggaaacataattattttcttgttgttctgctttgttgatgtttcaagtcaacttcatgtatcctaataaat |
219 |
Q |
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| T |
40572644 |
cttgcactgacacctgataataaacaaatggaaacataatcattttcttgttgctctgctttgttgatgtttcaagtcaacttcatgtatccaaagaaat |
40572545 |
T |
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| Q |
220 |
tagtcaaaatctcaaaatgctactctggtcttgaaggaccgagt |
263 |
Q |
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| T |
40572544 |
tagtcaaaatctcaaaatgctactatggtcttgaaggactgagt |
40572501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 40601698 - 40601477
Alignment:
| Q |
21 |
ccaccattttgttggaaaaaatgttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgaggc |
120 |
Q |
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||||| |||||||| |||||||||||||||||||||| | |||||||||| ||||| ||||||||||| | |||||| | ||| ||||||||||||| |
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| T |
40601698 |
ccaccgttttgttgaaaaaaatgttctttaagtttaacaagacttcttttcttcaatgctaaatatgcatacatgcttcctaccagtagtgctacgaggc |
40601599 |
T |
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| Q |
121 |
ttacactgacacctgaacataaagaaatggaaacataattattttcttgttgttctgctttgttgatgtttcaagtcaacttcatgtatcctaataaatt |
220 |
Q |
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||| | |||||||| ||||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||||||| ||||||||| | || | ||| |
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| T |
40601598 |
ctacgcagacacctgtacataaa-aaatggaaacataatcactttcttgttgttgtgctttgttgatgtttcaagtcaaattcatgtattcaaagacatt |
40601500 |
T |
|
| Q |
221 |
agtcaaaatctcaaaatgctact |
243 |
Q |
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||| || ||||||||||| |||| |
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| T |
40601499 |
agttaagatctcaaaatgttact |
40601477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 40597507 - 40597392
Alignment:
| Q |
44 |
ttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgaggcttacactgacacctgaacataaa |
143 |
Q |
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||||||||||||||||| |||| ||||||| || ||| |||| |||||||||||||| | ||| ||| |||||||||||||||| ||||||| ||||||| |
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| T |
40597507 |
ttctttaagtttaatgatctttattttcttcaaagcccaataagcataaaagcttcccaccagtagtcctacgaggcttacactaacacctggacataaa |
40597408 |
T |
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| Q |
144 |
gaaatggaaacataat |
159 |
Q |
| |
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||||||||||||||| |
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| T |
40597407 |
caaatggaaacataat |
40597392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 40568143 - 40568009
Alignment:
| Q |
20 |
gccaccattttgttggaaaaaatgttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgagg |
119 |
Q |
| |
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|||||| |||||||| ||||| |||||||||||| ||||| |||||||||||| |||||| |||| ||||||||||| || | ||| ||| || |||| |
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| T |
40568143 |
gccaccgttttgttgaaaaaattgttctttaagtcgaatgagctttcttttcttcaatgcccaatacgcataaaagctacccaccagtagtaatatgagg |
40568044 |
T |
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| Q |
120 |
cttacactgacacctgaacataaagaaatggaaac |
154 |
Q |
| |
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||||| |||||||||| ||||||| |||||||||| |
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| T |
40568043 |
cttacgctgacacctggacataaacaaatggaaac |
40568009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 40591049 - 40590881
Alignment:
| Q |
20 |
gccaccattttgttggaaaaaatgttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgagg |
119 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||| | |||||||| || ||||||||||| |||||| |||||||| ||| |||||||||||| |
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| T |
40591049 |
gccaccattttgttgaaaaaattgttctttaagtttatcaagctttctttgtttcaatgccaaataagcataattgcttccaaccagtagtgctacgagg |
40590950 |
T |
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| Q |
120 |
cttacactgacacctgaacataaagaaatggaaacataattattttcttgttgttctgctttgttgatgt |
189 |
Q |
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| ||| | ||||||| ||||||| ||||||||||||||| | |||| || || ||| ||||||||||| |
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| T |
40590949 |
cctacgcagacacctagacataaa-aaatggaaacataatcactttcatgctgctctaatttgttgatgt |
40590881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 2015593 - 2015737
Alignment:
| Q |
20 |
gccaccattttgttggaaaaaatgttctttaagtttaatgaactttcttttcttgaatgccaaatatgcataaaagcttccaatcagcagtgctacgagg |
119 |
Q |
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||||||||||||||| ||||| |||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||| |||||||| ||| |
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| T |
2015593 |
gccaccattttgttgaaaaaattgttctttcagtttaatgagctttcttttctttaatgccaaatacgcataaaagcttccaaccagtagtgctacaagg |
2015692 |
T |
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| Q |
120 |
cttacactgacacctgaacataaagaaatggaaacataattattttctt |
168 |
Q |
| |
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|| | |||||||||||||||||| ||||||||| || |||||||| |
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| T |
2015693 |
ctcatgctgacacctgaacataaa----tggaaacatgataattttctt |
2015737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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