View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15600_high_7 (Length: 259)

Name: NF15600_high_7
Description: NF15600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15600_high_7
NF15600_high_7
[»] chr1 (4 HSPs)
chr1 (1-244)||(20782490-20782734)
chr1 (1-244)||(29473138-29473382)
chr1 (1-110)||(20786762-20786872)
chr1 (1-110)||(29469195-29469305)
[»] chr6 (2 HSPs)
chr6 (1-244)||(26054754-26054994)
chr6 (1-244)||(26074807-26075047)
[»] chr8 (7 HSPs)
chr8 (1-244)||(19968894-19969138)
chr8 (1-244)||(21023671-21023915)
chr8 (1-111)||(44180196-44180307)
chr8 (1-111)||(44184541-44184652)
chr8 (1-110)||(19964943-19965053)
chr8 (1-110)||(21027943-21028053)
chr8 (1-111)||(6368314-6368424)
[»] chr7 (3 HSPs)
chr7 (1-244)||(29871575-29871819)
chr7 (122-244)||(8593707-8593829)
chr7 (1-110)||(29867482-29867592)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20782490 - 20782734
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20782490 gccactactttattagctaatttaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtcacaactgctgataca 20782589  T
Q  100 cgcgttcaacactcctccttgtatcagcagttggatattccaagtttctcccttagtaactcaaacctgcctgttggaagagcttttgtaaagatatatg 199  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  20782590 cacgttcaacactcctccttgtatcagtagttggatattccaagtttctcccttagtaactcaaacctgccttttggaagagcttttgtaaagatatctg 20782689  T
Q  200 acagctggtcttcagtcttgcagtacttcaaacacacatccccat 244  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  20782690 acagttggtcttcagtcttgcagtacttcaaacacacatcaccat 20782734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29473382 - 29473138
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29473382 gccactactttattagctaatttaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtcacaactgctgataca 29473283  T
Q  100 cgcgttcaacactcctccttgtatcagcagttggatattccaagtttctcccttagtaactcaaacctgcctgttggaagagcttttgtaaagatatatg 199  Q
    | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  29473282 cacgttcaacacttctccttgtatcagtagttggatattccaagtttctcccttagtaactcaaacctgccttttggaagagcttttgtaaagatatctg 29473183  T
Q  200 acagctggtcttcagtcttgcagtacttcaaacacacatccccat 244  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  29473182 acagttggtcttcagtcttgcagtacttcaaacacacatcaccat 29473138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20786762 - 20786872
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20786762 gccactactttattagctaatttaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtcacaactgctgataca 20786861  T
Q  100 cgcgttcaaca 110  Q
    | |||||||||    
T  20786862 cacgttcaaca 20786872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29469305 - 29469195
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29469305 gccactactttattagctaatttaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtcacaactgctgataca 29469206  T
Q  100 cgcgttcaaca 110  Q
    | |||||||||    
T  29469205 cacgttcaaca 29469195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26054994 - 26054754
Alignment:
Q  1 gccactactttattacctaattaaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgatacac 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26054994 gccactactttattagctaattaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgatacac 26054895  T
Q  101 gcgttcaacactcctccttgtatcagcagttggatattccaagtttctcccttagtaactcaaacctgcctgttggaagagcttttgtaaagatatatga 200  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||| |||    
T  26054894 acgttcaacactcctccttgtatcagtagttggatattccaagtttctccct---taactcaaacctgccttttggaagagcttttgtaaagatatctga 26054798  T
Q  201 cagctggtcttcagtcttgcagtacttcaaacacacatccccat 244  Q
    ||  ||||||||||||||||||||||||||||||||||| ||||    
T  26054797 caaatggtcttcagtcttgcagtacttcaaacacacatcaccat 26054754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26075047 - 26074807
Alignment:
Q  1 gccactactttattacctaattaaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgatacac 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26075047 gccactactttattagctaattaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgatacac 26074948  T
Q  101 gcgttcaacactcctccttgtatcagcagttggatattccaagtttctcccttagtaactcaaacctgcctgttggaagagcttttgtaaagatatatga 200  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||| |||    
T  26074947 acgttcaacactcctccttgtatcagtagttggatattccaagtttctccct---taactcaaacctgccttttggaagagcttttgtaaagatatctga 26074851  T
Q  201 cagctggtcttcagtcttgcagtacttcaaacacacatccccat 244  Q
    ||  ||||||||||||||||||||||||||||||||||| ||||    
T  26074850 caaatggtcttcagtcttgcagtacttcaaacacacatcaccat 26074807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 19969138 - 19968894
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  19969138 gccactactttattagctaatttaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcaatcacaactgctgataca 19969039  T
Q  100 cgcgttcaacactcctccttgtatcagcagttggatattccaagtttctcccttagtaactcaaacctgcctgttggaagagcttttgtaaagatatatg 199  Q
    | | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  19969038 cacattcaacactcctccttgtatcagtagttggatattccaagtttctcccttagtaactcaaacctgccttttggaagagcttttgtaaagatatctg 19968939  T
Q  200 acagctggtcttcagtcttgcagtacttcaaacacacatccccat 244  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  19968938 acagttggtcttcagtcttgcagtacttcaaacacacatcaccat 19968894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 21023671 - 21023915
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  21023671 gccactactttattagctaatttaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcaatcacaactgctgataca 21023770  T
Q  100 cgcgttcaacactcctccttgtatcagcagttggatattccaagtttctcccttagtaactcaaacctgcctgttggaagagcttttgtaaagatatatg 199  Q
    | | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  21023771 cacattcaacactcctccttgtatcagtagttggatattccaagtttctcccttagtaactcaaacctgccttttggaagagcttttgtaaagatatctg 21023870  T
Q  200 acagctggtcttcagtcttgcagtacttcaaacacacatccccat 244  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  21023871 acagttggtcttcagtcttgcagtacttcaaacacacatcaccat 21023915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 44180307 - 44180196
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44180307 gccactactttattagctaatttaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtcacaactgctgataca 44180208  T
Q  100 cgcgttcaacac 111  Q
    | ||||||||||    
T  44180207 cacgttcaacac 44180196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 44184652 - 44184541
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44184652 gccactactttattagctaatttaaaaactgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtcacaactgctgataca 44184553  T
Q  100 cgcgttcaacac 111  Q
    | ||||||||||    
T  44184552 cacgttcaacac 44184541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19965053 - 19964943
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  19965053 gccactactttattagctaatttaaaaactaaaatattaaaacaaattctcctaaagacttgatcaatcagtgcagctggcaatcacaactgctgataca 19964954  T
Q  100 cgcgttcaaca 110  Q
    | |||||||||    
T  19964953 cacgttcaaca 19964943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 21027943 - 21028053
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  21027943 gccactactttattagctaatttaaaaactaaaatattaaaacaaattctcctaaagacttgatcaatcagtgcagctggcaatcacaactgctgataca 21028042  T
Q  100 cgcgttcaaca 110  Q
    | |||||||||    
T  21028043 cacgttcaaca 21028053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 6368314 - 6368424
Alignment:
Q  1 gccactactttattacctaattaaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgatacac 100  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||  ||||||||||| ||||||||||| ||||||||    
T  6368314 gccactactttattagctaattaaaaactgaaatattaaaacaaattctcttagagacttggtcaaatagtgcagctggaagtaacaactgatgatacac 6368413  T
Q  101 gcgttcaacac 111  Q
      |||||||||    
T  6368414 atgttcaacac 6368424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29871819 - 29871575
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  29871819 gccactactttattagctaatttaaaaattgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcaactggcagtcacaactgctgataca 29871720  T
Q  100 cgcgttcaacactcctccttgtatcagcagttggatattccaagtttctcccttagtaactcaaacctgcctgttggaagagcttttgtaaagatatatg 199  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  29871719 cacgttcaacactcctccttgtatcagtagttggatattccaagtttctcccttagtaactcaaacctgccttttggaagagcttttgtaaagatatctg 29871620  T
Q  200 acagctggtcttcagtcttgcagtacttcaaacacacatccccat 244  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  29871619 acagttggtcttcagtcttgcagtacttcaaacacacatcaccat 29871575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 122 - 244
Target Start/End: Complemental strand, 8593829 - 8593707
Alignment:
Q  122 atcagcagttggatattccaagtttctcccttagtaactcaaacctgcctgttggaagagcttttgtaaagatatatgacagctggtcttcagtcttgca 221  Q
    |||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8593829 atcagcagttggatattcaaaatttctcccttaataactcaaaccttcctgttggaagagcttttgtaaagatatatgacaactggtcttcagtcttgca 8593730  T
Q  222 gtacttcaaacacacatccccat 244  Q
    |||||||||||||||||||||||    
T  8593729 gtacttcaaacacacatccccat 8593707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29867592 - 29867482
Alignment:
Q  1 gccactactttattacctaatt-aaaaactgaaatattaagacaaattctcctaaagacttggtcaatcagtgcagctggcagtaacaactgctgataca 99  Q
    ||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29867592 gccactactttattagctaatttaaaaattgaaatattaaaacaaattctcctaaagacttggtcaatcagtgcagctggcagtcacaactgctgataca 29867493  T
Q  100 cgcgttcaaca 110  Q
    | |||||||||    
T  29867492 cacgttcaaca 29867482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University