View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15600_low_11 (Length: 249)
Name: NF15600_low_11
Description: NF15600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15600_low_11 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 40578707 - 40578944
Alignment:
| Q |
12 |
atgaaggagacgaaaaaagatgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctattc |
111 |
Q |
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| T |
40578707 |
atgaaggagacggaaaaagatgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctattc |
40578806 |
T |
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| Q |
112 |
tttatttcaattcgttcataacatgatcatgtcaatatgtttactatcgcaatgaaaattgttgaaacttgaaagacatttcattggcaatcaacaacgt |
211 |
Q |
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| T |
40578807 |
tttatttcaattcgttcataacatgatcatgtcaatatgtttactatcgcaatgaaaattgttgaaacttgaaagacatttcattggcaatcaacaacgt |
40578906 |
T |
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| Q |
212 |
caatccatgttgaaaattgttgctctgaactgaaattc |
249 |
Q |
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| T |
40578907 |
caatccatgttgaaaattgttgctctgaactgaaattc |
40578944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 40572284 - 40572487
Alignment:
| Q |
30 |
gatgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctattctttatttcaattcgttca |
129 |
Q |
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| T |
40572284 |
gatgcagtccaaaatccagtaccaaatcaaggaaagatatcatgttaactatcgcattgagtgagtacaacacgttctattctttatttcaattcattca |
40572383 |
T |
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| Q |
130 |
taacatgatcatgtcaatatgtttactatcgcaatgaaaattgttgaaacttgaaagacatttcattggcaatcaacaacgtcaatccatgttgaaaatt |
229 |
Q |
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| T |
40572384 |
taacatgatcatgtccataagtgtactatcacaatgaaaattgttgaaacttgaaaggcatttcattatcaatcaacaacattaatccatgttgtaaatt |
40572483 |
T |
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| Q |
230 |
gttg |
233 |
Q |
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|||| |
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| T |
40572484 |
gttg |
40572487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 40601278 - 40601470
Alignment:
| Q |
30 |
gatgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctattctttatttcaattcgttca |
129 |
Q |
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| T |
40601278 |
gatgcagtccgaactccagtaccaaatcaaggaatgatatcttggatatcattgcattgagttagtaaaactaattttattctctatttcaattcattca |
40601377 |
T |
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| Q |
130 |
taacatgatcat---gtcaatatgtttactatcgcaatgaaaattgttgaaacttgaaagacatttcattggcaatcaacaacgtcaatccat |
219 |
Q |
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| T |
40601378 |
taacatgatcatcatgtctacaagattactatcacaatgaaaattgttgaaacttgaaaggaatttcattggaaatcaacaacattaatccat |
40601470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 40590701 - 40590848
Alignment:
| Q |
53 |
aaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctattctttatttcaattcgttcataacatgatcatgtcaatatgtt |
152 |
Q |
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|||||||| ||||| ||||| | ||||||||| |||||||||||||| | ||||||| ||||||| ||| ||||||| ||||||||||||| | ||| |
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| T |
40590701 |
aaatcaaggaaagatatcatctatatcattgcattgagtgagtacaactaatcctattctctatttcatttcattcataagatgatcatgtcaacaagtt |
40590800 |
T |
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| Q |
153 |
tactatcgcaatgaaaattgttgaaacttgaaagacatttcattggca |
200 |
Q |
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| T |
40590801 |
aacttccacaaggaaaaatgttgacacttgaaaggcatttcattggca |
40590848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 40596844 - 40596949
Alignment:
| Q |
12 |
atgaaggagacgaaaaaagatgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctattc |
111 |
Q |
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|||||||||||| |||||||||||||| |||||||| |||||||||||| |||||| ||| || ||| |||| |||||||||||||| | |||||||| |
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| T |
40596844 |
atgaaggagacggaaaaagatgcagtcaaaaatccattaccaaatcaaggaaagagtacatattggtcactgcattgagtgagtacaacgcattctattc |
40596943 |
T |
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| Q |
112 |
tttatt |
117 |
Q |
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| |||| |
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| T |
40596944 |
tctatt |
40596949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 40567695 - 40567768
Alignment:
| Q |
28 |
aagatgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaaca |
101 |
Q |
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| T |
40567695 |
aagatgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaaca |
40567768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 2016054 - 2015975
Alignment:
| Q |
31 |
atgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctatt |
110 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||| | ||||||||| |||||||||||||||| ||||||| |
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| T |
2016054 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctatt |
2015975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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