View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15600_low_3 (Length: 393)

Name: NF15600_low_3
Description: NF15600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15600_low_3
NF15600_low_3
[»] chr7 (2 HSPs)
chr7 (19-384)||(30434075-30434434)
chr7 (299-363)||(12742646-12742710)
[»] chr1 (4 HSPs)
chr1 (107-236)||(52226891-52227020)
chr1 (19-106)||(52227166-52227253)
chr1 (110-210)||(47805425-47805525)
chr1 (21-67)||(47805654-47805700)
[»] scaffold1348 (1 HSPs)
scaffold1348 (299-363)||(1581-1645)
[»] scaffold0061 (1 HSPs)
scaffold0061 (299-363)||(4007-4071)
[»] chr5 (2 HSPs)
chr5 (134-210)||(19986665-19986741)
chr5 (317-363)||(16800299-16800345)
[»] chr3 (2 HSPs)
chr3 (299-363)||(17194594-17194658)
chr3 (299-363)||(15604846-15604911)
[»] chr8 (1 HSPs)
chr8 (299-363)||(24638833-24638897)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 30434075 - 30434434
Alignment:
Q  19 cttgttcttgtaaacttccctcaatgcagctttccgcttctgggaaatcactgtcaaaacctgagcaatcgacaaccttacctccttaattttggagaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434075 cttgttcttgtaaacttccctcaatgcagctttccgcttctgggaaatcactgtcaaaacctgagcaatcgacaaccttacctccttaattttggagaga 30434174  T
Q  119 ttgttgggtgcacccccagtggccttagcaacatggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctttggtcttctgcc 218  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434175 ttgttgggtgcagcccgagtggccttagcaacacggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctttggtcttctgcc 30434274  T
Q  219 tcaactcgtgaactttgatcctggccattgttgaattcacgaggttcttctgcggctgcggctgcgcctcttgaaccctgctaaaacatgttaaacatac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||||    
T  30434275 tcaactcgtgaactttgatcctggccattgttgaattcacgaggttctt------ctgcgactgcgcctcttgaaccctgctaaaacatgttaaacatac 30434368  T
Q  319 atctcatacatgcgttaactaaacatacatttcatgcatcacataaattaaattatgtagtataat 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434369 atctcatacatgcgttaactaaacatacatttcatgcatcacataaattaaattatgtagtataat 30434434  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 12742710 - 12742646
Alignment:
Q  299 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 363  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12742710 ctaaaacaagttaagcatacatctcatacatgcgctaactaaacatacatttcatgcatcacata 12742646  T

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Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 52227020 - 52226891
Alignment:
Q  107 attttggagagattgttgggtgcacccccagtggccttagcaacatggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctt 206  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||  |||||||||  |||||||||||||| ||||||||||||||||| ||||||| ||    
T  52227020 attttggagagcttgttgggtgcaccaccagtgaccttagcaactcggagcaaagaaagttcagctttgagatctttgagctgagccaacagatcagttt 52226921  T
Q  207 tggtcttctgcctcaactcgtgaactttga 236  Q
    || | |||||||||||||| ||||| ||||    
T  52226920 tgtttttctgcctcaactcatgaaccttga 52226891  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 52227253 - 52227166
Alignment:
Q  19 cttgttcttgtaaacttccctcaatgcagctttccgcttctgggaaatcactgtcaaaacctgagcaatcgacaaccttacctcctta 106  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||| |||||||||||||| |||||||||||||||||||| ||| |||||    
T  52227253 cttgttcttgtatacttccctcaaagcagccttctgcttctgagaaatcactgtcaacacctgagcaatcgacaacctcaccacctta 52227166  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 47805525 - 47805425
Alignment:
Q  110 ttggagagattgttgggtgcacccccagtggccttagcaacatggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctttgg 209  Q
    |||||||| |||||||||||||| |||||| |||||||||||   ||||||   |||||||| |||||||||||||| |||||||| ||||||| |||||    
T  47805525 ttggagagcttgttgggtgcaccaccagtgaccttagcaacacatagcaaaatgagttcagccttgaggtctttgagttgagccaacagatcagatttgg 47805426  T
Q  210 t 210  Q
    |    
T  47805425 t 47805425  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 47805700 - 47805654
Alignment:
Q  21 tgttcttgtaaacttccctcaatgcagctttccgcttctgggaaatc 67  Q
    ||||||||||| |||||||||||||||| ||| ||||||| ||||||    
T  47805700 tgttcttgtaagcttccctcaatgcagccttctgcttctgagaaatc 47805654  T

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Target: scaffold1348 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 1645 - 1581
Alignment:
Q  299 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 363  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1645 ctaaaacatgttaagcatacatctcatacatgcgctaactaaacatacatttcatgcatcacata 1581  T

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Target: scaffold0061 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 4007 - 4071
Alignment:
Q  299 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 363  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4007 ctaaaacatgttaagcatacatctcatacatgcgctaactaaacatacatttcatgcatcacata 4071  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 19986665 - 19986741
Alignment:
Q  134 ccagtggccttagcaacatggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctttggt 210  Q
    |||||| |||||||||||  ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  19986665 ccagtgaccttagcaacacagagcaaagcgagttcagccttgaggtctttgagctgagccaacagatcagctttggt 19986741  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 16800299 - 16800345
Alignment:
Q  317 acatctcatacatgcgttaactaaacatacatttcatgcatcacata 363  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||    
T  16800299 acatcttatacatgtgttagctaaacatacatttcatgcatcacata 16800345  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 17194594 - 17194658
Alignment:
Q  299 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 363  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17194594 ctaaaacaagttaagcatacatctcatacatgcgctaactaaacatacatttcatgcatcacata 17194658  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 15604846 - 15604911
Alignment:
Q  299 ctaaaacatgttaaa-catacatctcatacatgcgttaactaaacatacatttcatgcatcacata 363  Q
    |||||||||||| || ||||||||  ||||||||| ||| ||| ||||||||||||||||||||||    
T  15604846 ctaaaacatgtttaagcatacatcatatacatgcgctaaataatcatacatttcatgcatcacata 15604911  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 24638897 - 24638833
Alignment:
Q  299 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 363  Q
    |||||||||||||| |||||||||||| |||| | |||||||||||||||| |||||||||||||    
T  24638897 ctaaaacatgttaagcatacatctcatgcatgtgctaactaaacatacattacatgcatcacata 24638833  T

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