View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15600_low_5 (Length: 365)
Name: NF15600_low_5
Description: NF15600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15600_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 25 - 355
Target Start/End: Complemental strand, 55654615 - 55654286
Alignment:
| Q |
25 |
ttggcaacatcactttacttagaaaaacaatctaggttcaattcatggagtcgcacatttggaagatatagtattagcgatcgttaactcaaaaattaat |
124 |
Q |
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| T |
55654615 |
ttggcaacatcactttacttagaaaaacaatctaggttcaattcatggagtcgcacatttggaagatatagtctaa-cgatcgttaacttaaaaattaat |
55654517 |
T |
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| Q |
125 |
cttatagcggattcaaattggtcaatatatacaagagtgtgtttgatatttttcacacatcataaaaatttgaagatgatagaaggggaaatcagcaact |
224 |
Q |
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| T |
55654516 |
cttatagtggatttaaattggtcaatatatacgagagtgtgtttgatatttttcacacatcataaaaaatttaagatgatagaaggagaaatcaacaact |
55654417 |
T |
|
| Q |
225 |
tcataatggtatggagtgtagcaacgatattattttgctacagctacacaatagggaagttgattcccaaaggtaaggtaagacttgtaaccctaattcc |
324 |
Q |
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| T |
55654416 |
tcataatggtatggagtgtagcaacaatattattttgctacagctacacaatagggaagttgattcccaaaggtaaggtaagatttgtaaccctaattcc |
55654317 |
T |
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| Q |
325 |
acccataataatcctcctccttctccctatg |
355 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
55654316 |
acccataataatcctcctccttctccctatg |
55654286 |
T |
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