View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15601_high_10 (Length: 321)

Name: NF15601_high_10
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15601_high_10
NF15601_high_10
[»] chr1 (11 HSPs)
chr1 (18-309)||(4872418-4872691)
chr1 (28-84)||(6326689-6326745)
chr1 (27-84)||(14508749-14508806)
chr1 (39-83)||(12535423-12535467)
chr1 (28-84)||(28239162-28239218)
chr1 (28-83)||(12532934-12532989)
chr1 (41-84)||(28231589-28231632)
chr1 (39-84)||(28326411-28326456)
chr1 (128-180)||(677215-677263)
chr1 (18-83)||(12540654-12540719)
chr1 (39-84)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (27-84)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (27-84)||(9066378-9066435)
chr2 (43-84)||(9068561-9068602)
[»] chr3 (1 HSPs)
chr3 (33-85)||(47924856-47924908)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 4872691 - 4872418
Alignment:
Q  18 ccaaattgcctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagatagattacgatatatagtagaaccaaagctgata 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4872691 ccaaattgcctaaagaaggtgattgcttgtttaaattgaccgaggatgcaatagccatagattagatagattacgatatatagtagaaccacagctgata 4872592  T
Q  118 ttcttagcagtcatttcagaataaaaatcataggcttgatgtacgtacaagtctatctttgcacagcctgcatattatgtacctgtagaacatattcgtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4872591 ttcttagcagtcatttcagaataaaaatcataggcttgatgtacgtacaagtctatctttgcacagcctgcgtattatgtacctgtagaacatattcgtg 4872492  T
Q  218 aaggctgttaagatccatctctatctttctgaacaagtggatggctcttttagtttcacctatctcacataagctaccgactagatgatgat 309  Q
    |||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872491 aaggctgttaagatc------------------caagtggatggctcttttagtttcacctatctcacataagctaccgactagatgatgat 4872418  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 6326689 - 6326745
Alignment:
Q  28 taaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  6326689 taaacaaggcaattgcttgttcaaattgaccgaggatgcaatagccatagattagat 6326745  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 14508749 - 14508806
Alignment:
Q  27 ctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||||||    
T  14508749 ctaaacaaggcaattgcttgtttaaattgaccgacgatgcaataaccatagattagat 14508806  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 12535423 - 12535467
Alignment:
Q  39 attgcttgtttaaattgaccgaggatgcaatagccatagattaga 83  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  12535423 attgcttgtttaaattgaccggtgatgcaatagccatagattaga 12535467  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 28239218 - 28239162
Alignment:
Q  28 taaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    |||||||| | ||||| |||||||||||||||||||||||||| ||||||| |||||    
T  28239218 taaagaagtcaattgcctgtttaaattgaccgaggatgcaataaccatagactagat 28239162  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 12532934 - 12532989
Alignment:
Q  28 taaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattaga 83  Q
    |||| ||||| |||||||||||||||||||||  |||| |||||||||||||||||    
T  12532934 taaacaaggcaattgcttgtttaaattgaccgttgatgtaatagccatagattaga 12532989  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 28231632 - 28231589
Alignment:
Q  41 tgcttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    ||||| |||||||||||||||||||||||| |||||||||||||    
T  28231632 tgcttctttaaattgaccgaggatgcaataaccatagattagat 28231589  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 28326456 - 28326411
Alignment:
Q  39 attgcttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||    
T  28326456 attgcttgtttaaattgaccgatgatacaatagccaaagattagat 28326411  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 677263 - 677215
Alignment:
Q  128 tcatttcagaataaaaatcataggcttgatgtacgtacaagtctatctttgca 180  Q
    ||||||||||||| ||||||||||||||||    |||||||||||||||||||    
T  677263 tcatttcagaatataaatcataggcttgat----gtacaagtctatctttgca 677215  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 12540719 - 12540654
Alignment:
Q  18 ccaaattgcctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattaga 83  Q
    |||||||  ||||| ||||| |||||||| |||||||||||   ||||||||||||||||| ||||    
T  12540719 ccaaattctctaaacaaggcaattgcttgcttaaattgaccagtgatgcaatagccatagactaga 12540654  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 47569297 - 47569252
Alignment:
Q  39 attgcttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    ||||||||||| |||||||| ||||||||||| |||||| ||||||    
T  47569297 attgcttgtttgaattgacccaggatgcaataaccataggttagat 47569252  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 1718036 - 1717979
Alignment:
Q  27 ctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    ||||| ||||| |||||||||||||||||||| | ||||||||| |||||||||||||    
T  1718036 ctaaacaaggcaattgcttgtttaaattgaccaacgatgcaataaccatagattagat 1717979  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 9066435 - 9066378
Alignment:
Q  27 ctaaagaaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    ||||| ||||| |||||| ||||||||||||||| ||| ||||| |||||||||||||    
T  9066435 ctaaacaaggcaattgctggtttaaattgaccgacgatacaataaccatagattagat 9066378  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 9068602 - 9068561
Alignment:
Q  43 cttgtttaaattgaccgaggatgcaatagccatagattagat 84  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  9068602 cttgtttaaattgaccaacgatgcaatagccatagattagat 9068561  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 47924856 - 47924908
Alignment:
Q  33 aaggcgattgcttgtttaaattgaccgaggatgcaatagccatagattagata 85  Q
    ||||| || ||||||||||||| ||||| |||||||||||||| |||||||||    
T  47924856 aaggcaatcgcttgtttaaattcaccgatgatgcaatagccattgattagata 47924908  T

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