View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15601_high_2 (Length: 568)

Name: NF15601_high_2
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15601_high_2
NF15601_high_2
[»] chr7 (7 HSPs)
chr7 (3-296)||(41267930-41268236)
chr7 (361-554)||(41267671-41267865)
chr7 (153-296)||(5069821-5069964)
chr7 (235-287)||(22974008-22974060)
chr7 (196-291)||(39474943-39475037)
chr7 (235-287)||(36619270-36619322)
chr7 (228-288)||(45697205-45697265)
[»] chr4 (11 HSPs)
chr4 (153-288)||(40780876-40781010)
chr4 (153-284)||(41162901-41163031)
chr4 (234-296)||(46108733-46108796)
chr4 (193-275)||(20354639-20354720)
chr4 (153-280)||(6779173-6779299)
chr4 (224-283)||(36145235-36145294)
chr4 (195-288)||(16645122-16645214)
chr4 (235-288)||(21429344-21429397)
chr4 (247-288)||(25406578-25406619)
chr4 (235-291)||(17946532-17946588)
chr4 (247-291)||(42722391-42722435)
[»] scaffold0635 (1 HSPs)
scaffold0635 (224-291)||(2102-2169)
[»] chr2 (18 HSPs)
chr2 (224-291)||(10106615-10106682)
chr2 (235-288)||(16325633-16325686)
chr2 (155-287)||(38962722-38962853)
chr2 (235-294)||(22593172-22593231)
chr2 (224-291)||(31740773-31740840)
chr2 (153-288)||(34356163-34356297)
chr2 (153-283)||(19976827-19976956)
chr2 (241-291)||(20963122-20963172)
chr2 (153-291)||(37560130-37560267)
chr2 (235-288)||(2784970-2785023)
chr2 (235-288)||(34346302-34346355)
chr2 (235-288)||(39201523-39201576)
chr2 (153-285)||(3643905-3644036)
chr2 (247-291)||(3848926-3848970)
chr2 (235-291)||(6358163-6358219)
chr2 (240-288)||(20116627-20116675)
chr2 (224-288)||(31088361-31088425)
chr2 (220-288)||(37804906-37804974)
[»] chr1 (11 HSPs)
chr1 (156-291)||(10336477-10336611)
chr1 (224-288)||(5504059-5504123)
chr1 (219-291)||(44716228-44716300)
chr1 (195-288)||(14254284-14254376)
chr1 (220-288)||(34719800-34719868)
chr1 (242-288)||(11397905-11397951)
chr1 (241-291)||(38859129-38859179)
chr1 (235-284)||(33498859-33498908)
chr1 (234-286)||(34697373-34697425)
chr1 (153-269)||(48798105-48798220)
chr1 (240-276)||(50094948-50094984)
[»] scaffold0002 (2 HSPs)
scaffold0002 (151-285)||(319380-319513)
scaffold0002 (153-288)||(530-664)
[»] chr8 (12 HSPs)
chr8 (153-291)||(18373971-18374108)
chr8 (153-296)||(33401806-33401948)
chr8 (235-288)||(14846617-14846670)
chr8 (224-284)||(583843-583903)
chr8 (235-279)||(3418537-3418581)
chr8 (235-296)||(26570966-26571028)
chr8 (247-288)||(3379827-3379868)
chr8 (235-280)||(22958812-22958857)
chr8 (240-296)||(43027352-43027409)
chr8 (153-296)||(8141063-8141206)
chr8 (247-291)||(25848230-25848274)
chr8 (228-288)||(45521203-45521263)
[»] chr6 (8 HSPs)
chr6 (153-291)||(8888843-8888980)
chr6 (247-288)||(34954634-34954675)
chr6 (155-287)||(8611990-8612121)
chr6 (153-288)||(13036019-13036153)
chr6 (234-288)||(14783435-14783489)
chr6 (235-288)||(11142645-11142698)
chr6 (235-291)||(374986-375042)
chr6 (216-288)||(5029840-5029912)
[»] chr5 (16 HSPs)
chr5 (229-291)||(22655170-22655231)
chr5 (224-284)||(23247370-23247430)
chr5 (158-280)||(14588640-14588761)
chr5 (217-291)||(20156156-20156230)
chr5 (235-284)||(21375390-21375439)
chr5 (155-287)||(12704974-12705105)
chr5 (235-291)||(14152089-14152145)
chr5 (224-288)||(42086355-42086419)
chr5 (235-296)||(15034114-15034176)
chr5 (218-291)||(3653926-3653999)
chr5 (235-288)||(9805043-9805096)
chr5 (235-280)||(20255408-20255453)
chr5 (235-284)||(35245025-35245074)
chr5 (235-287)||(9812911-9812963)
chr5 (235-287)||(12766170-12766222)
chr5 (195-291)||(35813010-35813105)
[»] chr3 (12 HSPs)
chr3 (235-291)||(23511605-23511661)
chr3 (252-288)||(32522034-32522070)
chr3 (235-291)||(33251700-33251756)
chr3 (224-288)||(47219171-47219235)
chr3 (153-210)||(47749197-47749254)
chr3 (153-296)||(29127876-29128019)
chr3 (234-296)||(47471868-47471931)
chr3 (235-280)||(3136718-3136763)
chr3 (247-288)||(30045871-30045912)
chr3 (153-210)||(40944840-40944897)
chr3 (253-296)||(11393482-11393526)
chr3 (247-287)||(46797978-46798018)
[»] scaffold0209 (1 HSPs)
scaffold0209 (224-284)||(12603-12663)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 41268236 - 41267930
Alignment:
Q  3 catgtgaattaaacttaccatatcaattattattcatagatccttgtagaccaaatatagatctttaattgttagatatcattcaattatgccctgtatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41268236 catgtgaattaaacttaccatatcaattattattcatagatccttgtagaccaaatatagatctttaattgttagatatcattcaattatgccctgtatt 41268137  T
Q  103 gacatttaaattaagatttctttttgaagtaacattga------------caagtttctgtaggctccagtggtaaggagcttcttcaaaggacatatcc 190  Q
    ||||||||||||||||||||||||||||||||||||||            |||||||||||||||||| |||||||||||||||||||||| || ||| |    
T  41268136 gacatttaaattaagatttctttttgaagtaacattgacaatatatcaaccaagtttctgtaggctccggtggtaaggagcttcttcaaagaacgtattc 41268037  T
Q  191 agaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc-ga 289  Q
      | |||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||    
T  41268036 gaagaatatcgagttcgatttttaggggagaataacgcttgattagtgtgcatgcctctacgcatgagttagattagtcgtccacctttgatgggtcgga 41267937  T
Q  290 aaccgat 296  Q
    |||||||    
T  41267936 aaccgat 41267930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 361 - 554
Target Start/End: Complemental strand, 41267865 - 41267671
Alignment:
Q  361 caccctacaactactttagtttttt-cccaatctctttatgagagaaaacctgtggcttggctgtaaaggtnnnnnnngatgatgggatgcagaagaggt 459  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||    
T  41267865 caccctacaactactttagtttttttcccaatctctttatgagagaaaacctgtggcttggctgtaaaggtaaaaaaagatgatgggatgcagaaggggt 41267766  T
Q  460 agatgggaatgccttaaatgtgtatcttaattttgtgttccatggctttctgagtccaactagatcataggcttgtacctcttaaatttctatct 554  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41267765 agatgagtatgccttaaatgtgtatcttaattttgtgttccatggctttctgagtccaactagatcataggcttgtacctcttaaatttctatct 41267671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 5069964 - 5069821
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| ||||||||||||| |||||| || || | |||||||| |||||||||  | ||  ||| |||||||   |||||||||||| |||| |    
T  5069964 ggctccagtggcaaggagcttcttctaaggacgtacccgggaaataccgggttcgatttcca-ggaggaacaacgcttagctagtgtgcatgcctctacg 5069866  T
Q  253 catgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    ||  || | ||||||||| ||||||||| |||||| |||||||||    
T  5069865 cacaagccggattagtcgcccacctttggtgggtcggaaaccgat 5069821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 22974008 - 22974060
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc 287  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||    
T  22974008 agtgtgcatgcgtctacgcatgagccagattagtcgtccacctttggtgggtc 22974060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 39474943 - 39475037
Alignment:
Q  196 ataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||||| ||||||||  |||||| ||| |||||||| | |||| |||| | |||| ||||||| | ||||||||||||||||||  ||||||||||    
T  39474943 ataccgggttcgattcctatggg-gaacaacgcttggtcagtgcgcatacctctacgcatgagccggattagtcgtccacctttagtgggtcgaaa 39475037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 36619322 - 36619270
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc 287  Q
    ||||||||||| |||| ||||||| | ||||||||||||||| ||| ||||||    
T  36619322 agtgtgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtc 36619270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 45697265 - 45697205
Alignment:
Q  228 cttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||| |||| |||||| |||| ||||||||  | ||||||||||||||||| |||||||    
T  45697265 cttgatcagtgcgcatgcctctacgcatgagttgggttagtcgtccacctttggtgggtcg 45697205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 40781010 - 40780876
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| ||||||||||||  |||||| ||| | ||||||| || |||||||| | | ||| ||| |||||||| | |||| |||||| |||| |    
T  40781010 ggctccagtggcaaggagcttcttttaaggacgtattcggaaaatatcgggttcgattctcaaggg-gaacaacgcttggtcagtgcgcatgcctctacg 40780912  T
Q  253 catgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||| | ||||||||||||||||||| |||||||    
T  40780911 catgagccggattagtcgtccacctttggtgggtcg 40780876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 284
Target Start/End: Complemental strand, 41163031 - 41162901
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||  |||||||| |||| |||||| ||||| | ||||||||||||||||||  | | | ||| ||| ||||   ||||| ||||||||||||    
T  41163031 ggctccagtgacaaggagctccttccaaggacgtatccgggaaataccgagttcgatttcca-gagggaacaacacttggccagtgtacatgcttctatg 41162933  T
Q  253 catgagtcagattagtcgtccacctttgatgg 284  Q
    |||||| |  |||||||| |||||||||||||    
T  41162932 catgagccgaattagtcgcccacctttgatgg 41162901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 46108733 - 46108796
Alignment:
Q  234 tagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    ||||| |||||| |||| ||||||| |||||||||||||||| ||||||||||| |||||||||    
T  46108733 tagtgcgcatgcctctacgcatgagccagattagtcgtccacttttgatgggtcggaaaccgat 46108796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 20354639 - 20354720
Alignment:
Q  193 aaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccac 275  Q
    ||||||||||||| |||||  | ||||||| ||||||||  ||||| |||||| |||| ||||||||| ||||||||||||||    
T  20354639 aaaataccgagtttgatttcca-gggagaacaacgcttggctagtgcgcatgcctctacgcatgagtcggattagtcgtccac 20354720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 6779173 - 6779299
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| ||||||||||||| |||||| || |  || ||||||| ||||||||   | ||| ||| ||| | ||   |||| |||||| ||||||    
T  6779173 ggctccagtggcaaggagcttcttccaaggacgtacctggagaataccgggttcgattcccagggg-gaacaacacctggccagtgcgcatgcctctatg 6779271  T
Q  253 catgagtcagattagtcgtccacctttg 280  Q
    |||||| | |||||||||||||||||||    
T  6779272 catgagccggattagtcgtccacctttg 6779299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 36145294 - 36145235
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatg 283  Q
    |||||||||| |||| |||||| ||||  |||||| | ||||||||||||||||||||||    
T  36145294 aacgcttgatcagtgcgcatgcctctacacatgagccggattagtcgtccacctttgatg 36145235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 16645122 - 16645214
Alignment:
Q  195 aataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    ||||||| |||||||||| | || |||| ||||||||   ||||||||||| ||||  |||||||| ||||||||| |||||| || |||||||    
T  16645122 aataccgggttcgattttca-ggaagaacaacgcttggccagtgtgcatgcctctacacatgagtctgattagtcgcccacctgtggtgggtcg 16645214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 21429344 - 21429397
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| |||||| |||| ||| |||||||| |||||||||||||||| |||||||    
T  21429344 agtgcgcatgcctctacgcacgagtcagactagtcgtccacctttggtgggtcg 21429397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 25406619 - 25406578
Alignment:
Q  247 tctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| |||||| ||||||||||||| ||||||||||||||||    
T  25406619 tctacgcatgaatcagattagtcgttcacctttgatgggtcg 25406578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 17946532 - 17946588
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||| |||||||||||  |||||||||||||||| |||||| |||| || |||||||    
T  17946532 agtgcgcatgcttctacacatgagtcagattagttgtccacttttggtgagtcgaaa 17946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 42722435 - 42722391
Alignment:
Q  247 tctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||||||||||||| |||||||||||||||  || ||||||||||    
T  42722435 tctatgcatgagtcggattagtcgtccaccaatggtgggtcgaaa 42722391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 2169 - 2102
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||||||||||| | |||||||||||||||| |||| |||||||||||||||||| || ||||||||    
T  2169 aacgcttgattagcgcgcatgcttctatgcataagtcggattagtcgtccacctttaataggtcgaaa 2102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 10106615 - 10106682
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||||||||||| | |||||||||||||||| |||| |||||||||||||||||| || ||||||||    
T  10106615 aacgcttgattagcgcgcatgcttctatgcataagtcggattagtcgtccacctttaataggtcgaaa 10106682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 16325633 - 16325686
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    ||||||||||| |||| ||||||| ||||||||||||||||| ||| |||||||    
T  16325633 agtgtgcatgcctctacgcatgagccagattagtcgtccaccattggtgggtcg 16325686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 287
Target Start/End: Original strand, 38962722 - 38962853
Alignment:
Q  155 ctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgca 254  Q
    ||||||||||||||||||  ||  |||||| ||||| |  ||||||| |||||||||| | | | ||| ||||||||   |||| |||||| |||| |||    
T  38962722 ctccagtggtaaggagctcatttcaaggacgtatccggggaataccgggttcgattttcaggag-gaacaacgcttggccagtgcgcatgcctctacgca 38962820  T
Q  255 tgagtcagattagtcgtccacctttgatgggtc 287  Q
    |||  | ||||||||||||||||||| ||||||    
T  38962821 tgaaccggattagtcgtccacctttggtgggtc 38962853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 22593172 - 22593231
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaaccg 294  Q
    |||| |||||| |||| ||||||| | ||||||||||||||||||| ||||||| |||||    
T  22593172 agtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcggaaccg 22593231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 31740840 - 31740773
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||||||| | |||| | ||||||||| ||| |||||||| |||||||||||||||| ||| ||||||    
T  31740840 aacgcttggtcagtgcgaatgcttctaggcacgagtcagactagtcgtccacctttggtggatcgaaa 31740773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 34356163 - 34356297
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| ||||||||  ||| |||||| ||||  |  ||||||| |||||||||  | ||| ||| ||| |||| | |||| |||||| ||||||    
T  34356163 ggctccagtggcaaggagctatttccaaggacgtatctggggaataccgggttcgatttccagggg-gaacaacacttggtcagtgcgcatgcctctatg 34356261  T
Q  253 catgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||| | ||||| |||| |||| |||||||||||    
T  34356262 catgagccggattaatcgtgcaccattgatgggtcg 34356297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 19976956 - 19976827
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| ||| ||||  ||| |||||| ||||| |  ||||||| |||||||||| | ||| |||||||| ||| | |||| |||||  |||| |    
T  19976956 ggctccagtggcaagtagctctttccaaggacgtatccggggaataccgggttcgattttcagggg-gaataacgtttggtcagtgcgcatgtctctacg 19976858  T
Q  253 catgagtcagattagtcgtccacctttgatg 283  Q
    ||| ||||  |||||||| ||||||||||||    
T  19976857 cataagtcgaattagtcgcccacctttgatg 19976827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 20963172 - 20963122
Alignment:
Q  241 catgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||| |||| | ||||| ||||||||||| ||||||||||||||||||||    
T  20963172 catgcctctacgtatgaggcagattagtcgcccacctttgatgggtcgaaa 20963122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 291
Target Start/End: Original strand, 37560130 - 37560267
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||||||| |||| |||| |||||| || ||    ||||||  |||||||| | | ||| ||| |||| ||| | |||| |||||| |||| |    
T  37560130 ggctccagtggtaagaagctccttccaaggacgtacccgaggaataccaggttcgattctcaaggg-gaacaacgtttggtcagtgcgcatgcctctacg 37560228  T
Q  253 catgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    || ||| | ||||| ||||||||||||||||||||||||    
T  37560229 cacgagccggattaatcgtccacctttgatgggtcgaaa 37560267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 2784970 - 2785023
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| |||||| |||| ||||||||||||||||||||||| | |||||| ||||    
T  2784970 agtgcgcatgcctctacgcatgagtcagattagtcgtccatcattgatgagtcg 2785023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 34346355 - 34346302
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    ||||||||||| |||| ||||||||||||||| |||  |||||||| |||||||    
T  34346355 agtgtgcatgcctctacgcatgagtcagattaatcgctcacctttggtgggtcg 34346302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 39201576 - 39201523
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    ||||||||||| |||| ||||||| | |||||||||| |||||||| |||||||    
T  39201576 agtgtgcatgcctctacgcatgagccggattagtcgttcacctttggtgggtcg 39201523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 3644036 - 3643905
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| ||||||||  ||| |||||| ||||| |  ||||||| ||| ||||| || | | ||| ||||||||   |||| |||||| |||| |    
T  3644036 ggctccagtggaaaggagctcattccaaggacgtatccggggaataccgggtttgatttctacgag-gaacaacgcttggccagtgcgcatgcctctacg 3643938  T
Q  253 catgagtcagattagtcgtccacctttgatggg 285  Q
    ||||||   ||||||||||||||||||| ||||    
T  3643937 catgagctggattagtcgtccacctttggtggg 3643905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 3848970 - 3848926
Alignment:
Q  247 tctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||    
T  3848970 tctacgcacgagtcggattagtcgttcacctttgatgggtcgaaa 3848926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 6358219 - 6358163
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||| |||||| |||| ||||||| | ||||||||||||||| ||| ||||||||||    
T  6358219 agtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcgaaa 6358163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 20116675 - 20116627
Alignment:
Q  240 gcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||| |||| ||||||| | |||||| ||||||||||||||||||||    
T  20116675 gcatgcctctacgcatgagccggattagccgtccacctttgatgggtcg 20116627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 31088361 - 31088425
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||||||  ||| ||||||| |||| |||||||||||||||| |  ||||| |||||||||||    
T  31088361 aacgcttgaacagtatgcatgcctctacgcatgagtcagattagccacccaccattgatgggtcg 31088425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 37804974 - 37804906
Alignment:
Q  220 gaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    ||||||||||||  ||||| ||||||  ||| |||||||||||||| || | ||||| |||||||||||    
T  37804974 gaataacgcttggctagtgcgcatgccgctacgcatgagtcagatttgttgcccaccattgatgggtcg 37804906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 156 - 291
Target Start/End: Original strand, 10336477 - 10336611
Alignment:
Q  156 tccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgcat 255  Q
    |||||||| |||||||| |||| || ||| ||||| || |||| || |||||||||| | ||| ||| |||||||||  |||| |||||| |||| ||||    
T  10336477 tccagtggcaaggagctccttccaaagacgtatccggagaatatcgggttcgattttcagggg-gaacaacgcttgaccagtgcgcatgcctctacgcat 10336575  T
Q  256 gagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||| | ||||| ||||||||||||||||| ||||||    
T  10336576 gagccggattaatcgtccacctttgatggatcgaaa 10336611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 5504059 - 5504123
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||||||||||||  ||||| |||| ||||||| | |||||||||||||||||||||||||||    
T  5504059 aacgcttgattagtgcacatgcctctacgcatgagccggattagtcgtccacctttgatgggtcg 5504123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 44716300 - 44716228
Alignment:
Q  219 agaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||| |||| |||| ||||| |||||| | ||||||||||||||||||||||||||  |||| ||||||||||    
T  44716300 agaacaacgtttgactagtgcgcatgcctttatgcatgagtcagattagtcgtccatttttggtgggtcgaaa 44716228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 288
Target Start/End: Complemental strand, 14254376 - 14254284
Alignment:
Q  195 aataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||||||||||||||| | ||| ||| ||||||||   |||  |||||| | || ||||||| | |||||||||||||||||||||||||||    
T  14254376 aataccgagttcgattttcagggg-gaacaacgcttggccagtacgcatgcctttacgcatgagccggattagtcgtccacctttgatgggtcg 14254284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 34719800 - 34719868
Alignment:
Q  220 gaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||||||||||  |||| |||||| |||| ||| |||||||||||||||  |||||||| |||||||    
T  34719800 gaataacgcttgaccagtgcgcatgcctctacgcacgagtcagattagtcgctcacctttggtgggtcg 34719868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 11397951 - 11397905
Alignment:
Q  242 atgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| |||| ||||||||| ||||||||||||||||||| |||||||    
T  11397951 atgcctctacgcatgagtcggattagtcgtccacctttggtgggtcg 11397905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 38859179 - 38859129
Alignment:
Q  241 catgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||| |||| ||| ||||||||||| ||| ||||||||||||||||||||    
T  38859179 catgcctctacgcacgagtcagattaatcgcccacctttgatgggtcgaaa 38859129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 33498908 - 33498859
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgg 284  Q
    |||| |||||| |||| ||||||| | |||||||||||||||||||||||    
T  33498908 agtgcgcatgcctctacgcatgagccggattagtcgtccacctttgatgg 33498859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 34697373 - 34697425
Alignment:
Q  234 tagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggt 286  Q
    |||||||||||| |||| ||||||| | ||||||||| |||| ||||||||||    
T  34697373 tagtgtgcatgcctctacgcatgagccggattagtcgcccacttttgatgggt 34697425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 269
Target Start/End: Complemental strand, 48798220 - 48798105
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| |||||||| |||| || ||| ||||| |  |||| || |||||||||  | ||| ||| ||||||||| ||||| |||||| |||| |    
T  48798220 ggctccagtggcaaggagctccttccaatgacgtatccggggaatatcgggttcgatttcca-gggggaacaacgcttgactagtgcgcatgcctctacg 48798122  T
Q  253 catgagtcagattagtc 269  Q
    |||||| | ||||||||    
T  48798121 catgagccggattagtc 48798105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 50094948 - 50094984
Alignment:
Q  240 gcatgcttctatgcatgagtcagattagtcgtccacc 276  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  50094948 gcatgcttctacgcatgagtcggattagtcgtccacc 50094984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 319380 - 319513
Alignment:
Q  151 taggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttcta 250  Q
    ||||||||||||| |||||||| |||| |||||| ||||| |  ||||||| ||| ||||| || ||| ||| ||||||||   |||| |||| | ||||    
T  319380 taggctccagtggcaaggagctccttccaaggacgtatccggggaataccgggtttgatttcta-gggggaacaacgcttggccagtgcgcatccctcta 319478  T
Q  251 tgcatgagtcagattagtcgtccacctttgatggg 285  Q
    ||||||||   ||||||||||||||||||| ||||    
T  319479 tgcatgagctggattagtcgtccacctttggtggg 319513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 530 - 664
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||| ||||| |||||||| |||| |||||| || || |  ||||||| ||||||||   | ||| ||| ||| |||||| ||||||||||| |||| |    
T  530 ggctctagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgattcgcagggg-gaacaacacttgatcagtgtgcatgcctctacg 628  T
Q  253 catgagtcagattagtcgtccacctttgatgggtcg 288  Q
     ||||| |||||||||||  |||||||| |||||||    
T  629 tatgagccagattagtcgctcacctttggtgggtcg 664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 153 - 291
Target Start/End: Original strand, 18373971 - 18374108
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||| ||| ||||||||  ||| || || |||||| | |||||||  |||||||| | | ||||||| |||||||||  |||| |||||| |||| |    
T  18373971 ggctccaatggcaaggagctcattccaaagatatatccgggaaataccaggttcgattctca-gggagaacaacgcttgaccagtgcgcatgcctctacg 18374069  T
Q  253 catgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||||| | ||||||||||||| ||||| ||||||||||    
T  18374070 catgagccggattagtcgtccaactttggtgggtcgaaa 18374108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 33401948 - 33401806
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| |||||||| |||  |||||| ||  | |  ||||||| |||||||||| | ||| ||| ||| |||||  ||||||||||| |||| |    
T  33401948 ggctccagtggcaaggagctcctttcaaggacgtactcggggaataccgggttcgattttcagggg-gaacaacacttgaccagtgtgcatgcctctacg 33401850  T
Q  253 catgagtcagattagtcgtccacctttgatgggtcgaaaccgat 296  Q
    |||||||| ||||||||| ||||||||  ||| || ||||||||    
T  33401849 catgagtcggattagtcgcccacctttagtggatcaaaaccgat 33401806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 14846617 - 14846670
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| |||||| |||| ||||||||||||| ||||||||||||||| |||||||    
T  14846617 agtgcgcatgcctctacgcatgagtcagataagtcgtccacctttggtgggtcg 14846670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 583843 - 583903
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgg 284  Q
    |||||||||  |||| |||||| |||| ||||||||| ||||||||| |||||||||||||    
T  583843 aacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgcccacctttgatgg 583903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 3418581 - 3418537
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccaccttt 279  Q
    |||| |||||| |||| ||||||||||||||||||||||||||||    
T  3418581 agtgcgcatgcgtctacgcatgagtcagattagtcgtccaccttt 3418537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 26570966 - 26571028
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    |||||| |||| |||| ||||||| | |||||||||||||||||||||| ||| |||||||||    
T  26570966 agtgtgtatgcatctacgcatgagccggattagtcgtccacctttgatgagtcggaaaccgat 26571028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 3379868 - 3379827
Alignment:
Q  247 tctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||||||||||| |||||||||||||| |||| |||||||    
T  3379868 tctatgcatgagtcggattagtcgtccacttttggtgggtcg 3379827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 22958812 - 22958857
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttg 280  Q
    ||||||||||  |||||||||||| | |||||||||||||||||||    
T  22958812 agtgtgcatgtctctatgcatgagccggattagtcgtccacctttg 22958857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 43027352 - 43027409
Alignment:
Q  240 gcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    |||||| |||| ||||||| | ||||||||||||| |||||||||||| |||||||||    
T  43027352 gcatgcctctacgcatgagccggattagtcgtccatctttgatgggtcggaaaccgat 43027409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 296
Target Start/End: Original strand, 8141063 - 8141206
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| |||||||| |||| |||||| ||| | |  ||||||| |||||||||  | |||| || ||||||||   |||| |||||| |||| |    
T  8141063 ggctccagtggcaaggagctgcttccaaggacgtattcggggaataccgggttcgatttccagggga-aacaacgcttggccagtgcgcatgcctctacg 8141161  T
Q  253 catgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    ||||||    ||||||||||||| |||| |||||| |||||||||    
T  8141162 catgagctgaattagtcgtccacatttggtgggtcagaaaccgat 8141206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 25848230 - 25848274
Alignment:
Q  247 tctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||| ||||||||| || |||||||||||||||| ||||||||||    
T  25848230 tctacgcatgagtcggactagtcgtccacctttgctgggtcgaaa 25848274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 45521203 - 45521263
Alignment:
Q  228 cttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||| |||| |||||| |||| ||||||| | |||||||||  ||||||||||||||||    
T  45521203 cttgatcagtgcgcatgcctctacgcatgagccggattagtcgctcacctttgatgggtcg 45521263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 153 - 291
Target Start/End: Original strand, 8888843 - 8888980
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    |||||| |||| |||||| || ||  |||||| |||||||  |||| ||| ||||||||||| |||| || |||| |||   |||| |||| | |||| |    
T  8888843 ggctcctgtggcaaggagttttttttaaggacgtatccagggaatatcgaattcgatttttaaggga-aacaacgtttggccagtgcgcatacctctacg 8888941  T
Q  253 catgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  8888942 catgagtcggattagtcgtccacctttgatggatcgaaa 8888980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 34954675 - 34954634
Alignment:
Q  247 tctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  34954675 tctacgcatgagccagattagtcgtccacctttgatgggtcg 34954634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 8612121 - 8611990
Alignment:
Q  155 ctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgca 254  Q
    ||||||||| |||||||| |||| |||||| || || |  ||||||| ||||||||   | | | ||| |||||||||  |||||||||||||||| |||    
T  8612121 ctccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgattccgaggag-gaacaacgcttgaccagtgtgcatgcttctacgca 8612023  T
Q  255 tgagtcagattagtcgtccacctttgatgggtc 287  Q
    |||  | ||||||||| ||||||||| ||||||    
T  8612022 tgaaccggattagtcgcccacctttggtgggtc 8611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 13036153 - 13036019
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| |||||||| |||| |||||| ||| | |  |||| || |||||||||| | ||| ||| ||| ||||   |||| |||||| |||| |    
T  13036153 ggctccagtggcaaggagctccttccaaggacgtattcggggaatatcgggttcgattttcagggg-gaacaacacttggccagtgcgcatgcctctacg 13036055  T
Q  253 catgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||| ||||||||||||||||  ||| |||||||    
T  13036054 catgagccagattagtcgtccactattggtgggtcg 13036019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 14783489 - 14783435
Alignment:
Q  234 tagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||||||||| |||| ||||||| | ||||||||||||||| ||| |||||||    
T  14783489 tagtgtgcatgcctctacgcatgagccggattagtcgtccaccattggtgggtcg 14783435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 11142645 - 11142698
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| |||||| |||| ||||||||||||||||| ||||| ||||| |||||||    
T  11142645 agtgcgcatgcctctacgcatgagtcagattagttgtccaactttggtgggtcg 11142698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 375042 - 374986
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||| |||||| |||||||||||||  |||||||| || | ||||||||||||||||    
T  375042 agtgcgcatgcctctatgcatgagttggattagtcatctatctttgatgggtcgaaa 374986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 5029840 - 5029912
Alignment:
Q  216 gggagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    ||||||| |||| ||| | |||| |||||| |||| ||||||||  ||||||||| ||| |||||||||||||    
T  5029840 gggagaacaacgtttggtcagtgcgcatgcctctacgcatgagttggattagtcgcccatctttgatgggtcg 5029912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 22655231 - 22655170
Alignment:
Q  229 ttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||| ||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||    
T  22655231 ttgatcagtgtgcatgcctctacgcataagtcagattagtcgtccacctttg-tgggtcgaaa 22655170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 23247430 - 23247370
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgg 284  Q
    |||||||||| ||| ||||||| |||| ||| ||| |||||||||||||||||||||||||    
T  23247430 aacgcttgatcagtatgcatgcctctacgcacgagccagattagtcgtccacctttgatgg 23247370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 280
Target Start/End: Complemental strand, 14588761 - 14588640
Alignment:
Q  158 cagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgcatga 257  Q
    |||||| ||||||||||||  |||||| ||||  |  |||| || |||||||||| | | | |||||||||||||  |||| |||||| |||| ||||||    
T  14588761 cagtggcaaggagcttctttcaaggacgtatctggggaatatcgggttcgattttcaggag-gaataacgcttgaccagtgcgcatgcctctacgcatga 14588663  T
Q  258 gtcagattagtcgtccacctttg 280  Q
    | | |||||||||||||||||||    
T  14588662 gccggattagtcgtccacctttg 14588640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 20156230 - 20156156
Alignment:
Q  217 ggagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||||| ||| ||||  ||||| |||||| |||||||||||||||||||| ||||||||| || |||| ||||||    
T  20156230 ggagaacaacacttggctagtgcgcatgcatctatgcatgagtcagattaatcgtccaccattaatggatcgaaa 20156156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 21375390 - 21375439
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgg 284  Q
    |||| ||||||||||| ||||||||| ||||||||||||| |||||||||    
T  21375390 agtgcgcatgcttctacgcatgagtcggattagtcgtccatctttgatgg 21375439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 287
Target Start/End: Original strand, 12704974 - 12705105
Alignment:
Q  155 ctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgca 254  Q
    ||||||||| |||||||| |||| |||||| || || |  ||||||| ||||||||   | | | ||| |||||||||  |||||||||||||||| |||    
T  12704974 ctccagtggcaaggagctccttccaaggacgtacccggggaataccgggttcgattccgaggag-gaacaacgcttgaccagtgtgcatgcttctacgca 12705072  T
Q  255 tgagtcagattagtcgtccacctttgatgggtc 287  Q
    |||  | ||||||||| ||||||||| ||||||    
T  12705073 tgaaccggattagtcgcccacctttggtgggtc 12705105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 14152089 - 14152145
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||||||||||||||| |||||| | ||||| ||||||||| ||||||| ||||||    
T  14152089 agtgtgcatgcttctatccatgagccggattaatcgtccaccattgatggatcgaaa 14152145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 42086355 - 42086419
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||||||  |||| |||||| |||| ||||||| | ||||||||||||||||||| |||||||    
T  42086355 aacgcttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcg 42086419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 15034114 - 15034176
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    ||||||||||| |||| ||||||| | ||||||| ||||||||||||||| || |||||||||    
T  15034114 agtgtgcatgcctctacgcatgagcctgattagttgtccacctttgatggatcggaaaccgat 15034176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 3653999 - 3653926
Alignment:
Q  218 gagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||| |||||||||  |||| |||||| |||| ||| ||| | ||||||||||||||||||| ||| ||||||    
T  3653999 gagaacaacgcttgaccagtgcgcatgcctctacgcacgaggcggattagtcgtccacctttggtggatcgaaa 3653926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 9805043 - 9805096
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| |||||| |||| ||||||| | ||||||||||||||||||| |||||||    
T  9805043 agtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcg 9805096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 20255408 - 20255453
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttg 280  Q
    |||| |||||| |||| ||||||||| |||||||||||||||||||    
T  20255408 agtgcgcatgcctctacgcatgagtcggattagtcgtccacctttg 20255453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 35245074 - 35245025
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgg 284  Q
    |||||||||||||||| ||||||| | ||||||| | |||||||||||||    
T  35245074 agtgtgcatgcttctacgcatgagcctgattagttgcccacctttgatgg 35245025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 9812911 - 9812963
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc 287  Q
    |||||||||||||||| ||||||  | ||||||||| ||||||||| ||||||    
T  9812911 agtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtc 9812963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 12766170 - 12766222
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc 287  Q
    ||||||||||| |||| ||||||  ||||||||||| ||||||||| ||||||    
T  12766170 agtgtgcatgcctctacgcatgaaccagattagtcgcccacctttggtgggtc 12766222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 291
Target Start/End: Complemental strand, 35813105 - 35813010
Alignment:
Q  195 aataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||||| ||||||||  || |||| ||||| ||||||  |||| |||||  ||||  |||||||| |||||||||||||||||||| | |||||||    
T  35813105 aataccgggttcgattcctagggga-aataatgcttgaccagtgcgcatgtctctacacatgagtcggattagtcgtccacctttgaagtgtcgaaa 35813010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 23511605 - 23511661
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    |||| |||||| |||| ||||||||| ||||| ||||||||||||||||||||||||    
T  23511605 agtgcgcatgcctctacgcatgagtcggattaatcgtccacctttgatgggtcgaaa 23511661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 32522034 - 32522070
Alignment:
Q  252 gcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||||||||||||||||||||||||||||||||||||    
T  32522034 gcatgagtcagattagtcgtccacctttgatgggtcg 32522070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 33251700 - 33251756
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcgaaa 291  Q
    ||||||||||| |||| ||||||| | |||||||||||||| |||||||||||||||    
T  33251700 agtgtgcatgcctctacgcatgagccggattagtcgtccacatttgatgggtcgaaa 33251756  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 47219171 - 47219235
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    ||||||||  ||||| |||||| |||| ||||||| | |||||||||||||||||||||||||||    
T  47219171 aacgcttggctagtgcgcatgcctctacgcatgagccggattagtcgtccacctttgatgggtcg 47219235  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 47749254 - 47749197
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatt 210  Q
    |||||||||||||| |||||||||| |||||| |||||||  ||||||| ||||||||    
T  47749254 ggctccagtggtaatgagcttcttccaaggacgtatccagggaataccgggttcgatt 47749197  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 296
Target Start/End: Original strand, 29127876 - 29128019
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatttttatgggagaataacgcttgattagtgtgcatgcttctatg 252  Q
    ||||||||||| |||||| | |||| |||||| ||||  |  |||| || |||||||||  | ||||||| ||| |||| | |||| |||||| |||| |    
T  29127876 ggctccagtggcaaggagatccttccaaggacgtatctggggaatatcgggttcgatttcca-gggagaacaacacttggtcagtgcgcatgcctctacg 29127974  T
Q  253 catgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    |||||| | ||||||||| ||||||||| |||||| |||||||||    
T  29127975 catgagccggattagtcgcccacctttggtgggtcggaaaccgat 29128019  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 47471868 - 47471931
Alignment:
Q  234 tagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    ||||| ||||||||||| ||||||| |  |||||||||||||||||| |||||| |||||||||    
T  47471868 tagtgcgcatgcttctacgcatgagccgaattagtcgtccacctttggtgggtcggaaaccgat 47471931  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 3136763 - 3136718
Alignment:
Q  235 agtgtgcatgcttctatgcatgagtcagattagtcgtccacctttg 280  Q
    |||| |||||| |||| ||||||||| |||||||||||||||||||    
T  3136763 agtgcgcatgcctctacgcatgagtcggattagtcgtccacctttg 3136718  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 30045871 - 30045912
Alignment:
Q  247 tctatgcatgagtcagattagtcgtccacctttgatgggtcg 288  Q
    |||| ||| ||||| |||||||||||||||||||||||||||    
T  30045871 tctacgcacgagtctgattagtcgtccacctttgatgggtcg 30045912  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 40944840 - 40944897
Alignment:
Q  153 ggctccagtggtaaggagcttcttcaaaggacatatccagaaaataccgagttcgatt 210  Q
    |||||| |||| ||| |||| |||| |||||| |||||||| ||||||||||||||||    
T  40944840 ggctccggtggcaagaagctccttccaaggacgtatccagagaataccgagttcgatt 40944897  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 11393526 - 11393482
Alignment:
Q  253 catgagtcagattagtcgtccacctttgatgggtc-gaaaccgat 296  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||    
T  11393526 catgagccagattagtcgtccacctttgattggtcggaaaccgat 11393482  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 46797978 - 46798018
Alignment:
Q  247 tctatgcatgagtcagattagtcgtccacctttgatgggtc 287  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  46797978 tctacgcatgagtcagactagttgtccacctttgatgggtc 46798018  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 12603 - 12663
Alignment:
Q  224 aacgcttgattagtgtgcatgcttctatgcatgagtcagattagtcgtccacctttgatgg 284  Q
    |||||||||  |||| |||||| |||| ||||||||| ||||||||| |||||||||||||    
T  12603 aacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgcccacctttgatgg 12663  T

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