View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15601_high_4 (Length: 467)
Name: NF15601_high_4
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 32956587 - 32956825
Alignment:
| Q |
15 |
aagaagaagatggagtagtgtatgagtaagggtcaaaatcgtaatgatcatgttgttggtagttagagtaaagcaaagagtaattagaatttgtttgagg |
114 |
Q |
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| T |
32956587 |
aagaagaagatggagtagtgtatgagtaagggtcaaaatcgcaatgatcatgttgttggtagttagagtaaatcaaagagtagttagaatttgtttgagg |
32956686 |
T |
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| Q |
115 |
atgaaacataccacatgtgcatgttcctcccattatgtgaccttgttgagagctactacaacaatgatgcatcattggttggtgatgaatgagtgtgaca |
214 |
Q |
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| T |
32956687 |
atgaaacataccacatgtgcatgttcctcccattatgtgaccttgttgagagctactacaacaatgatgcatca----ttggtgatgaatgattgtgaca |
32956782 |
T |
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| Q |
215 |
atattagtatgttgcaatgttgtatgaaatggtttgaatttat |
257 |
Q |
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| T |
32956783 |
atattagtatgttgcaatgttgtatgaaatggtttgaatttat |
32956825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 323 - 448
Target Start/End: Original strand, 32956891 - 32957016
Alignment:
| Q |
323 |
ttgattgggtagtcaaaagtgggcacgtgacagagggaacagtcttccaggatctgccttcttcgatcacgaggcttttatttagctttactaaatccaa |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32956891 |
ttgattgggtagtcaaaagtgggcacgtgacagagggaacagtcttccaggatctgccttcttcgatcacgaggcttttatttagctttactaaatccaa |
32956990 |
T |
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| Q |
423 |
ttctattcataaactctgtattcgta |
448 |
Q |
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| T |
32956991 |
ttctattcataaactctgtattcgta |
32957016 |
T |
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