View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15601_high_7 (Length: 362)
Name: NF15601_high_7
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 172 - 354
Target Start/End: Original strand, 23133523 - 23133705
Alignment:
| Q |
172 |
tccaaaaatatcttcattttgaaaccaactattactttgcatgaatatttccaaagaatgctaaagaacaaaagttggcttcctccatcgacaattggaa |
271 |
Q |
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| T |
23133523 |
tccaaaaatatcttcattttgaaaccaactattactttgcatggatatttccaaagaatgctaaagaacaaaagttggcttccgccatcgacaattggaa |
23133622 |
T |
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| Q |
272 |
tgaagctacgactccatggtgcaggtattgttgctttcacctttgatcaatatatagtttttgacctgttacttttgatgatg |
354 |
Q |
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| T |
23133623 |
tgaagctacgactccatggtgcaggtattgttgctttcacctttgatcaatatatagtttttgacccgttactttttatgatg |
23133705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 23133301 - 23133452
Alignment:
| Q |
18 |
agttggctcgtgggattgtacgattctacgatccagagaaccacgggttccatgcagcaatactagaagttgactagttgctatcagacaaactataaag |
117 |
Q |
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| T |
23133301 |
agttggctcgtgggattgtacgattctacgatccagagaaccacgggttccatgcaacaatactagaagttgactagttgctatcagacaaactataaag |
23133400 |
T |
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| Q |
118 |
gcatatgtgcttattgtttttaagtttgttttgaatccaactttgattattg |
169 |
Q |
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| T |
23133401 |
gcatatgtgcttattgtttttaagtttgttttgaatccaactttgattattg |
23133452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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