View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15601_low_1 (Length: 784)
Name: NF15601_low_1
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 547 - 766
Target Start/End: Original strand, 11160339 - 11160557
Alignment:
| Q |
547 |
cttatttgccaattagaccctagttgcttgctttataaatagcactcacgccttttctttttaattcaattcactcattctattgtccaaagtcagagaa |
646 |
Q |
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| T |
11160339 |
cttatttgccaattagaccctagttgcttgctttataaatagcactcacgccttttctttttaattcaattcactcattctattgtccaa-gtcagagaa |
11160437 |
T |
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| Q |
647 |
agaaatatagtgtttagggtttttatccaaatcaaaatcatgtctgacggtgttgaatcatcaacggctacgaagaagatcacactgaagagttccgaca |
746 |
Q |
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| T |
11160438 |
agaaatatagtgtttagggtttttatccaaatcaaaatcatgtctgacggtgttgaatcatcaacggcgacgaagaagatcacactgaagagttccgaca |
11160537 |
T |
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| Q |
747 |
acgagaccttcgaaattgaa |
766 |
Q |
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| T |
11160538 |
acgagaccttcgaaattgaa |
11160557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 246 - 435
Target Start/End: Original strand, 11160035 - 11160223
Alignment:
| Q |
246 |
gcattagcacagtataaagagcggacatacgctaatattgatatatcattctattttggttttttcnnnnnnntagttaaatatttgatatatcaatcaa |
345 |
Q |
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| T |
11160035 |
gcattagcacagtataaaaagcaaacatacgctaatattgatatattattctattttggttttttcaaaaaaatagttaaatattcgatatatcaatcaa |
11160134 |
T |
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| Q |
346 |
tcaatattctatannnnnnnngtcataaaaaatatctactatatannnnnnnnaaaattttcttcaaaagatataacaactacaccgtat |
435 |
Q |
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| T |
11160135 |
tcaatattctatattttttttgtcataaaaaatatctactatat-ttttttttaaaatcttcttcaaaagatataacaactaaaccgtat |
11160223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 11159812 - 11159851
Alignment:
| Q |
22 |
aagaatggttataagaattgttggtggcttggtgccattc |
61 |
Q |
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| T |
11159812 |
aagaatggttataagaattgttggtggcttggtgccattc |
11159851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 11159919 - 11159955
Alignment:
| Q |
130 |
ttggtgttattgaaaaagataacaatagcttgttacg |
166 |
Q |
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| T |
11159919 |
ttggtgttattgaaaaagataacaatagtttgttacg |
11159955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 530
Target Start/End: Original strand, 11160288 - 11160321
Alignment:
| Q |
497 |
tctgaatataaaagttgtttgccaagttttcctc |
530 |
Q |
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| T |
11160288 |
tctgaatataaaacttgtttgccaagttttcctc |
11160321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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