View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15601_low_11 (Length: 341)
Name: NF15601_low_11
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 41569732 - 41569469
Alignment:
| Q |
19 |
ttatatatgtggctgaattcagaagatttggtgtatactaatgtatgaaccgtgtccaattcagaagattttttgtataatgattcaacactgcaaatgc |
118 |
Q |
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| T |
41569732 |
ttatatatgtggctgaattcagaagatttggtgtgtactaatgtatcaaccgtgtccaattcagaagattttttgtgtaatgattcaacactgcaaatgc |
41569633 |
T |
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| Q |
119 |
acagagcaaaataacatgtgtggcaaatcgtgtggggtcgctgaatagaagtggact-aatcattgttgtgtcatgtgtggcaaatattcattttgttgt |
217 |
Q |
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| T |
41569632 |
acagagcaaaataacatgtgtggtaaatcgtgtggggtcgctgaatagaagtggactaaatcattgttgtgtcatgtgtggcaaatattcattttgttgt |
41569533 |
T |
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| Q |
218 |
acactactcttgatgatgatttttacacgtcaaaattaacaatgaatttaattaaggtccattt |
281 |
Q |
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| T |
41569532 |
acactactcttgatgatgatttttacacgtgaaaattaacaatgaatttaattaaggtccattt |
41569469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 41556043 - 41555984
Alignment:
| Q |
19 |
ttatatatgtggctgaattcagaagatttggtgtatactaatgtatgaaccgtgtccaat |
78 |
Q |
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| T |
41556043 |
ttatatatgtggctaaattcagaagatttggtgtgtactaatgtatcaaccgtgtccaat |
41555984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 41588576 - 41588523
Alignment:
| Q |
167 |
aagtggactaatcattgttgtgtcatgtgtggcaaatattcattttgttgtaca |
220 |
Q |
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| T |
41588576 |
aagtggactaacctttgttgtgtcatgtgtggcaaagattcattttggtgtaca |
41588523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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