View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15601_low_12 (Length: 329)
Name: NF15601_low_12
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 37967850 - 37967678
Alignment:
| Q |
1 |
taaaaattatatatatgctgtcttgatttaaattcatgtagagtacacaaggcttaccactatatttcgtccatcattgaaattgtccctgccaaaataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37967850 |
taaaaattatatatatgctgtcttgatttaacttcatgcagagtacacaaggcttaccactatatttcgtccatcattgaaattgtccctgccagaataa |
37967751 |
T |
|
| Q |
101 |
ttaaagctctggtaaatgtaaacattgataacctcacttaaacacattttaagtaaaattcaatggtttcatt |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967750 |
ttaaagctctggtaaatgtaaacattgataacctcacttaaacacattttaagtaaaattcaatggtttcatt |
37967678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 37967650 - 37967511
Alignment:
| Q |
173 |
tgatccctaagggcgttgtttaacaagtctaatgaattatatgaagttatgtatttaatacattgaaaagggagggatatactcaatgttgtcacgggat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967650 |
tgatccctaagggcgttgtttaacaagtctaatgaattatatgaagttatgtatttaatacattgaaaagggagggatatactcaatgttgtcacgggat |
37967551 |
T |
|
| Q |
273 |
gcgaagtgttttcacgaatcctagtctgtaggatgttctt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967550 |
gcgaagtgttttcacgaatcctagtctgtaggatgttctt |
37967511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University