View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15601_low_15 (Length: 275)
Name: NF15601_low_15
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 37 - 266
Target Start/End: Original strand, 33721193 - 33721422
Alignment:
| Q |
37 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggttannnnnnnngc |
136 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| || |
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| T |
33721193 |
gccttgcatattctttccacatgtcctaactgacaacacttctgacattttacgtttggtctccaccaatatctgttttgtggatggttattttttttgc |
33721292 |
T |
|
| Q |
137 |
agtatggacagggtgaaaagagacttgtattgcttctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctccttc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721293 |
agtatggacagggtgaaaagagacttgtattgcttctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctccttc |
33721392 |
T |
|
| Q |
237 |
cactaaaccttcagaccttatcattcttct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
33721393 |
cactaaaccttcagaccttatcattcttct |
33721422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 37 - 266
Target Start/End: Original strand, 28698405 - 28698635
Alignment:
| Q |
37 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggttannnnnnnn-g |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
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| T |
28698405 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacgtctggtctccaccaacatctgtttggtggatggttatttttttttg |
28698504 |
T |
|
| Q |
136 |
cagtatggacagggtgaaaagagacttgtattgcttctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctcctt |
235 |
Q |
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||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28698505 |
cagaatggacaaggtgaaaagagacttgtattgctgctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctcctt |
28698604 |
T |
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| Q |
236 |
ccactaaaccttcagaccttatcattcttct |
266 |
Q |
| |
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||||| ||||||||||||||||||||||||| |
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| T |
28698605 |
ccactgaaccttcagaccttatcattcttct |
28698635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 37 - 266
Target Start/End: Complemental strand, 627184 - 626952
Alignment:
| Q |
37 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggttannnnnnnn-- |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| |
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| T |
627184 |
gccttgcatattctttccacatgtcctaactggccacacttgtgacattttacgtctggtctccaccaacatctgtttggtggatggttatttttttttt |
627085 |
T |
|
| Q |
135 |
-gcagtatggacagggtgaaaagagacttgtattgcttctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctcc |
233 |
Q |
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|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
627084 |
tgcagtatggatagggtgaaaagagacttatattgctgctctggtttcttttctcattccttccaccattgtagttctttaatttagcttgtaatgctcc |
626985 |
T |
|
| Q |
234 |
ttccactaaaccttcagaccttatcattcttct |
266 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
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| T |
626984 |
ttccactgaaccttcagaccttatcattcttct |
626952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 29868483 - 29868428
Alignment:
| Q |
211 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
29868483 |
tttaatttagcttgtaatgctccttccactgatccttcagaccttatcattcttct |
29868428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 19965949 - 19965894
Alignment:
| Q |
211 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19965949 |
tttaatttagcttgtaatgctccttccactgaaccttcagaccttatcattcttct |
19965894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 21027047 - 21027102
Alignment:
| Q |
211 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
21027047 |
tttaatttagcttgtaatgctccttccactgaaccttcagaccttatcattcttct |
21027102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 20785866 - 20785921
Alignment:
| Q |
211 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
20785866 |
tttaatttagcttgtaatgctccttccactgaaccttcagaccttatcattcttct |
20785921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 29470195 - 29470140
Alignment:
| Q |
211 |
tttaatttagcttgtaatgctccttccactaaaccttcagaccttatcattcttct |
266 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
29470195 |
tttaatttagcttgcaatgctccttccactgaaccttcagaccttatcgttcttct |
29470140 |
T |
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