View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15601_low_20 (Length: 235)
Name: NF15601_low_20
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 3645546 - 3645338
Alignment:
| Q |
12 |
cacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaacttcaaagatgagtagacaagtaaggtaacaacagtggcaccagcaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3645546 |
cacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaacttcaaagatgagtagactagtaaggtaacaacagtggcaccagcaat |
3645447 |
T |
|
| Q |
112 |
aataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaatnnnnnnntgaagggttttacttcaataaagccaaattcatagcacgaagg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3645446 |
aataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaataaaaaaatgaagggttttacttcaataaagccaaattcatagcacgaagg |
3645347 |
T |
|
| Q |
212 |
tattatttt |
220 |
Q |
| |
|
||||||||| |
|
|
| T |
3645346 |
tattatttt |
3645338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 3636294 - 3636145
Alignment:
| Q |
12 |
cacagatattgattatgactacaagtaataagaaaactgggaaatttgtaaacttcaaagatgagtagacaagtaaggtaacaacagtggcaccagcaat |
111 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3636294 |
cacagatattgattatcaccacaagtaataagaaaactgtgaaatttgtaaacttcaaagatgagtagacaagtaaggtaactacagtggcaccagcaat |
3636195 |
T |
|
| Q |
112 |
aataaaagacagattttgtgtcaccaaccacaatttcaaaacctgccaat |
161 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
3636194 |
aataaaagacagattttgtgtcaccagccacaattgcaatacctgccaat |
3636145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University