View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15601_low_3 (Length: 563)
Name: NF15601_low_3
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 269 - 553
Target Start/End: Complemental strand, 25977948 - 25977661
Alignment:
| Q |
269 |
aatcgcgtgttactttaacctatttga-tgtgtgttattttaacctgtttaatgcctattcagatctcgatcaaagacaggtcctcgctattaaaattga |
367 |
Q |
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| T |
25977948 |
aatcgcgtgttactttaacctatttgactgtatgttattttaatctgtttaatgcctattcagatctcgatcaaagacaggtcttcgctattaaaattga |
25977849 |
T |
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| Q |
368 |
ctatcacataaaatatttttgcaagtgctttaattttggtgaaatcgactctct--acctcaaacatacgccatcagatcacaaagtgttttgcccttca |
465 |
Q |
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| T |
25977848 |
ctatcacataaaatatttttacaagtgctttaattttggtgaaatcgactctctctacctcaaacatacgccatcagatcacaaagtgttttgcccttca |
25977749 |
T |
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| Q |
466 |
taattgatttgcaaaggttataggttgcttcccatatttcttcactcatattaggttcaattttactcacttcattgctttccctttg |
553 |
Q |
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| T |
25977748 |
taattgatttgcaaaggttataggttgcttcccatatttcttcactcatattaggttcaattttactcacttcattgctttccctttg |
25977661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 25978403 - 25978187
Alignment:
| Q |
23 |
agagcgtacatgaagccattgaagacttgtacttttgcagaacgaagcgctttgagcttgaaccaatattacggagagacaactttagatttggacaaat |
122 |
Q |
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| T |
25978403 |
agagcgtacatgaagccattgaagacttgtacttttgcagaatgaagcgctttgagcttgaaccaatattacggagagacaactttagatttggacaaat |
25978304 |
T |
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| Q |
123 |
attctcttacaatgttgctgaaatcttatcttcagtttgcccaactccaacgtctcttctctaaaccataaactttcttcattggtgtaaaaccaaagct |
222 |
Q |
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| T |
25978303 |
attctcttacaatgttgctgaaatcttatcttcattttgcccaactccaacgtctcttctctcaa-cagaaactttcttcactggtgtaaaagcaaagct |
25978205 |
T |
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| Q |
223 |
attcaaattgaaaaaggt |
240 |
Q |
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| T |
25978204 |
attcaaactgaaaaaggt |
25978187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 407 - 553
Target Start/End: Complemental strand, 25963584 - 25963436
Alignment:
| Q |
407 |
tgaaatcgactctc--tacctcaaacatacgccatcagatcacaaagtgttttgcccttcataattgatttgcaaaggttataggttgcttcccatattt |
504 |
Q |
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|||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||| |||||| |
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| T |
25963584 |
tgaaatcgactctccctacctcaaacataaaccattagatcaccaagtgttttgcccttcataattgatttgcaaagattattagttgattctcatattc |
25963485 |
T |
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| Q |
505 |
cttcactcatattaggttcaattttactcacttcattgctttccctttg |
553 |
Q |
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| T |
25963484 |
cttcactcatattagttgcgattttactcactccattgctttccctttg |
25963436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 25963673 - 25963597
Alignment:
| Q |
271 |
tcgcgtgttactttaacctatttgat-gtgtgttattttaacctgtttaatgcctattcagatctcgatcaaagaca |
346 |
Q |
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||||||||||||||| |||||||| | | ||| ||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
25963673 |
tcgcgtgttactttaccctatttgctcgccagttgttttaacctatttaatgtccattcagatctcgatcaaagaca |
25963597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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