View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15601_low_4 (Length: 508)
Name: NF15601_low_4
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_4 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| |
|
| [»] chr6 (16 HSPs) |
| |
|
| [»] scaffold0038 (3 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0286 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 7 - 508
Target Start/End: Original strand, 12336 - 12836
Alignment:
| Q |
7 |
tacagggattcctacaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtattat |
106 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12336 |
tacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtat-at |
12434 |
T |
|
| Q |
107 |
aactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12435 |
aactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccga |
12534 |
T |
|
| Q |
207 |
gtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12535 |
gtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccata |
12634 |
T |
|
| Q |
307 |
gctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatatgata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12635 |
gctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatatgata |
12734 |
T |
|
| Q |
407 |
ttgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgt |
506 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12735 |
ttgagtttgacatcgacagtatcaatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgt |
12834 |
T |
|
| Q |
507 |
ac |
508 |
Q |
| |
|
|| |
|
|
| T |
12835 |
ac |
12836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 7 - 508
Target Start/End: Complemental strand, 2170925 - 2170425
Alignment:
| Q |
7 |
tacagggattcctacaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtattat |
106 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2170925 |
tacagggattccgccaagtttaaaatgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtat-at |
2170827 |
T |
|
| Q |
107 |
aactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170826 |
aactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccga |
2170727 |
T |
|
| Q |
207 |
gtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170726 |
gtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccata |
2170627 |
T |
|
| Q |
307 |
gctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatatgata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170626 |
gctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatatgata |
2170527 |
T |
|
| Q |
407 |
ttgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgt |
506 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170526 |
ttgagtttgacatcgacagtatcaatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaatctgt |
2170427 |
T |
|
| Q |
507 |
ac |
508 |
Q |
| |
|
|| |
|
|
| T |
2170426 |
ac |
2170425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 505
Target Start/End: Original strand, 2187693 - 2188192
Alignment:
| Q |
7 |
tacagggattcctacaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtatt-- |
104 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2187693 |
tacagggattccgccaagtttaaaacgtttgtctgcattacaatgcaattcactgacttcctcatgtagaagcatgctacttagtcaggttttgtatttt |
2187792 |
T |
|
| Q |
105 |
-----ataactatctgacttcatatttgatatttcataatgattttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggag |
199 |
Q |
| |
|
||| |||| ||||||||| ||| |||||||||||||||||| |||||||||||||| |||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
2187793 |
gttttatatctatttgacttcatttttaatatttcataatgatttttcttgctaaacttgttagttctttacaaataacagcatttgcatgaagatggag |
2187892 |
T |
|
| Q |
200 |
gcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttccc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
2187893 |
gcaccgagtttagtttggcaggaagtgctagggttccagagtggtttgatcaccaaagcgagggaccatcaatttctttttggtttcgtggcaggttccc |
2187992 |
T |
|
| Q |
300 |
ttccatagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaa |
399 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
2187993 |
ttccatagctctcttcgttgctagtctatcaacggataacaggcatcccaacagtgattttctttcattaacagcccatctgagaac------ctatacc |
2188086 |
T |
|
| Q |
400 |
tatgatattgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcg |
499 |
Q |
| |
|
||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||| |
|
|
| T |
2188087 |
gatggtattgagtttgacatcaacagtgtcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctgcgacagcaagtgatggaactcg |
2188186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 175 - 343
Target Start/End: Original strand, 28142629 - 28142797
Alignment:
| Q |
175 |
taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt |
274 |
Q |
| |
|
|||||||| ||||||| | |||| |||| || ||| ||| |||||||| | |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
28142629 |
taacaggaactgcatgaggctggaagcacagattttcgttgggcaggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaatta |
28142728 |
T |
|
| Q |
275 |
ctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaatcaatggataacaagc |
343 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||| || ||||||||| |
|
|
| T |
28142729 |
ctttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaatccataaataacaagc |
28142797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 28246359 - 28246497
Alignment:
| Q |
175 |
taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt |
274 |
Q |
| |
|
|||||||| ||||||| | |||||| ||| | ||| |||| ||||| ||| ||||||||||| ||||||||||| ||||||| ||||| |||||| |
|
|
| T |
28246359 |
taacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaattt |
28246458 |
T |
|
| Q |
275 |
ctttctggtttcgtgacaggttcccttccatagctctct |
313 |
Q |
| |
|
|||| ||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
28246459 |
ctttttggtttcgtaacaagctcccttccatggctctct |
28246497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 28525229 - 28525367
Alignment:
| Q |
175 |
taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt |
274 |
Q |
| |
|
|||||||| ||||||| | |||||| ||| |||| ||||| ||||| ||| ||||||||||||||||||||||| |||| || ||||| |||||| |
|
|
| T |
28525229 |
taacaggaactgcatgaggctggaggaaccaggttttgtttgccaggatttgcaaggattccagagtggtttgatcaccaaaacatgggacatacaattt |
28525328 |
T |
|
| Q |
275 |
ctttctggtttcgtgacaggttcccttccatagctctct |
313 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| ||||||| |
|
|
| T |
28525329 |
ctttttggtttcgtaacaacctcccttccattgctctct |
28525367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 28239435 - 28239519
Alignment:
| Q |
229 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct |
313 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| |||||||||| ||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
28239435 |
aggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
28239519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 28246196 - 28246287
Alignment:
| Q |
10 |
agggattcctacaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgt |
101 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||| ||| |||||| |||||||||||||| || | || ||||||| | | ||||||||||| |
|
|
| T |
28246196 |
agggattccaccaaatttaaaacacttgtctgcaatacgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgt |
28246287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 26805556 - 26805614
Alignment:
| Q |
230 |
ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt |
288 |
Q |
| |
|
|||| ||||| |||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
26805556 |
ggataccagattggtttgagcaccaaagcaagggacccacaatttctttctggtttcgt |
26805614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 28191265 - 28191337
Alignment:
| Q |
34 |
cttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtattat |
106 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||| ||||||| ||||||| | | ||||||||||| |||| |
|
|
| T |
28191265 |
cttgtctgcagcaaactgcaaatcattgacttcctcgtgtagaaacatgctattgaatcaggttttgttttat |
28191337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 28192527 - 28192463
Alignment:
| Q |
23 |
agtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctact |
87 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| |||||||||||||| || || ||||||||||| |
|
|
| T |
28192527 |
agtttaaaacatttgtctgcattaaattgcaaatcattgacttcctcttgcaggagcatgctact |
28192463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 29829103 - 29829203
Alignment:
| Q |
233 |
ttccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaatcaat |
332 |
Q |
| |
|
|||||||||||||||| || |||| | ||| |||||||| ||||| ||||||||| ||| | |||| ||||| | |||||||||| | |||||||||| |
|
|
| T |
29829103 |
ttccagagtggtttgagcaccaaaatagggggccatcaatatctttttggtttcgtaacaagctccccaccataaccctcttcgttgtttgtaaatcaat |
29829202 |
T |
|
| Q |
333 |
g |
333 |
Q |
| |
|
| |
|
|
| T |
29829203 |
g |
29829203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 27715626 - 27715568
Alignment:
| Q |
230 |
ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt |
288 |
Q |
| |
|
|||| ||||| |||||||| || ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
27715626 |
ggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt |
27715568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 28152278 - 28152364
Alignment:
| Q |
229 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttc |
315 |
Q |
| |
|
||||||||||||| |||| | || || |||| | ||| | |||||||||||||||||| | ||| | |||||||||| ||||||||| |
|
|
| T |
28152278 |
aggattccagagtcgtttaagcaccagagcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctcttc |
28152364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 28526606 - 28526672
Alignment:
| Q |
35 |
ttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgt |
101 |
Q |
| |
|
|||||| ||||| | ||||| || |||||||| |||||||||||||||||| | | ||||||||||| |
|
|
| T |
28526606 |
ttgtctccattaaattgcaaatcgttgacttcgtcatgtagaagcatgctaatgaatcaggttttgt |
28526672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 29671593 - 29671548
Alignment:
| Q |
268 |
tcaatttctttctggtttcgtgacaggttcccttccatagctctct |
313 |
Q |
| |
|
||||||||||||||||||||| ||| ||| ||| |||||||||||| |
|
|
| T |
29671593 |
tcaatttctttctggtttcgtaacaagtttcctgccatagctctct |
29671548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 28151916 - 28151992
Alignment:
| Q |
25 |
tttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgt |
101 |
Q |
| |
|
||||||| ||||||||||||| | || || |||| | |||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
28151916 |
tttaaaatgcttgtctgcattgaattgtaaatcatcaagttcctcatgtagaaacatgctactgaatcaggttttgt |
28151992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 46521 - 46659
Alignment:
| Q |
175 |
taacaggatgtgcatgaagatggaggcaccgagtttagtttggcaggaagtgctaggattccagagtggtttgatcaacaaagcaagggaccatcaattt |
274 |
Q |
| |
|
|||||||| ||||||| | |||||| ||| | ||| |||| ||||| ||| ||||||||||| ||||||||||| ||||||| ||||| |||||| |
|
|
| T |
46521 |
taacaggaactgcatgaggctggaggaaccaaattttgtttttcaggatttgcaaggattccagattggtttgatcaccaaagcatgggacatacaattt |
46620 |
T |
|
| Q |
275 |
ctttctggtttcgtgacaggttcccttccatagctctct |
313 |
Q |
| |
|
|||| ||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
46621 |
ctttttggtttcgtaacaagctcccttccatggctctct |
46659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 39597 - 39681
Alignment:
| Q |
229 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctct |
313 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| |||||||||| ||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
39597 |
aggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctct |
39681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 46358 - 46449
Alignment:
| Q |
10 |
agggattcctacaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgt |
101 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||| ||| |||||| |||||||||||||| || | || ||||||| | | ||||||||||| |
|
|
| T |
46358 |
agggattccaccaaatttaaaacacttgtctgcaatacgctgcaaatcattgacttcctcgtgcaaaaacatgctattgaatcaggttttgt |
46449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 16694001 - 16694090
Alignment:
| Q |
10 |
agggattcctacaagtttaaaacgcttgtctgcattacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggtttt |
99 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||| || || | || ||| |||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
16694001 |
agggattcctccaaatttaaaacgtttgtctgcattgcaatgtgaatctttgtcttcctcatgcagaagcatgctactgaatcaggtttt |
16694090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 16319 - 16377
Alignment:
| Q |
230 |
ggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgt |
288 |
Q |
| |
|
|||| ||||| |||||||| || ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
16319 |
ggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt |
16377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 55355 - 55270
Alignment:
| Q |
229 |
aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctctt |
314 |
Q |
| |
|
|||||||||||||||||||| || |||| || ||||| | |||||||| ||||||||| ||| | ||||||||| |||||||| |
|
|
| T |
55355 |
aggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaacaagctcccttccacggctctctt |
55270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 18652647 - 18652591
Alignment:
| Q |
228 |
taggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtt |
284 |
Q |
| |
|
|||||||||||| ||||| || || ||||||| ||| | |||||||||||||||||| |
|
|
| T |
18652647 |
taggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggtt |
18652591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 18676729 - 18676673
Alignment:
| Q |
228 |
taggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtt |
284 |
Q |
| |
|
|||||||||||| ||||| || || ||||||| ||| | |||||||||||||||||| |
|
|
| T |
18676729 |
taggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggtt |
18676673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 18686772 - 18686716
Alignment:
| Q |
228 |
taggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtt |
284 |
Q |
| |
|
|||||||||||| ||||| || || ||||||| ||| | |||||||||||||||||| |
|
|
| T |
18686772 |
taggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggtt |
18686716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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