View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15601_low_5 (Length: 505)
Name: NF15601_low_5
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 3433357 - 3433844
Alignment:
| Q |
1 |
tgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433357 |
tgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
3433456 |
T |
|
| Q |
101 |
tatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
3433457 |
tatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaagattaggaaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtt |
3433556 |
T |
|
| Q |
201 |
tgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagtgcaatggcttttttgtacttttgtagatattcatcattgactaaatgt |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||| |
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| T |
3433557 |
tgcttgttgtatgaaattacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtatttttgtagatattcatcgttgaccaaatgt |
3433656 |
T |
|
| Q |
301 |
gctgcttgtctaacccttaagggttgagttgatgaaggaaatttgtaatctatgatttttgtggaatttggtggacaacaattaagaccactgggtgtag |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433657 |
gctgcttgtcttacccttaagggttgagttgatgaaggaaatttgtaatctatgatttttgtggaatttggtggacaacaattaagaccactgggtgtag |
3433756 |
T |
|
| Q |
401 |
cacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagt |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3433757 |
cacctgagggtagatctggtggtccacatgtagaaaggtctggtgcggatattggagaagctagggcaaaagggttagcggtgaaagt |
3433844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 3427166 - 3427653
Alignment:
| Q |
1 |
tgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427166 |
tgcatgccatttggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
3427265 |
T |
|
| Q |
101 |
tatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
3427266 |
tatgaaaaggaaaaaagagccaagaattatgaacttgaagatcaagattagggaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtt |
3427365 |
T |
|
| Q |
201 |
tgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagtgcaatggcttttttgtacttttgtagatattcatcattgactaaatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427366 |
tgcttgttgtatgaaactacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtacttttgtagatattcatcattgactaaatgt |
3427465 |
T |
|
| Q |
301 |
gctgcttgtctaacccttaagggttgagttgatgaaggaaatttgtaatctatgatttttgtggaatttggtggacaacaattaagaccactgggtgtag |
400 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | | ||||| | |
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|
| T |
3427466 |
gctgcttgtcttacccttaagggttgatttgatgaaggaattttgtaatttatgatttttgtggaatttggtggacaacaattaatattgtttggtgttg |
3427565 |
T |
|
| Q |
401 |
cacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagt |
488 |
Q |
| |
|
||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427566 |
cacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagt |
3427653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 2 - 488
Target Start/End: Complemental strand, 11897109 - 11896629
Alignment:
| Q |
2 |
gcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatct |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |
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|
| T |
11897109 |
gcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacctaagatcctttcatagaaataaaggtaccacct |
11897010 |
T |
|
| Q |
102 |
atgaaaaggaaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatattt |
201 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||| |
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|
| T |
11897009 |
atgaaaaggaaaaaagagccaagagccatgaacttgaagatcaaggttagggaagccaacttgggaatatgcaccatcacaataagcacagtggacgttt |
11896910 |
T |
|
| Q |
202 |
gcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagtgcaatggcttttttgtacttttgtagatattcatcattgactaaatgtg |
301 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| ||||||| |
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|
| T |
11896909 |
gcttgttgcatgaaactacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtatttttgaagatattcatcgttgaccaaatgtg |
11896810 |
T |
|
| Q |
302 |
ctgcttgtctaacccttaagggttgagttgatgaaggaaatttgtaatctatgatttttgtggaatttggtggacaacaattaagaccactgggtgtagc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| || | || | || |
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|
| T |
11896809 |
ctgcttgtctaacccttaagggttgagttaatggaggaaatttgtaatctatgatttttgtggattttggtggacaacaatcaatatca------attgc |
11896716 |
T |
|
| Q |
402 |
acctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagt |
488 |
Q |
| |
|
|||||||| || || || || | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11896715 |
acctgaggatatatgtgatgacctacatttagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagt |
11896629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 11912443 - 11912059
Alignment:
| Q |
1 |
tgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
11912443 |
tgcatgccattaggagcgtcaaagttccaaaatggtaaagcaaaggctggatcattgatcaaactacccaagattctctcatggaaataaaggtaccatc |
11912344 |
T |
|
| Q |
101 |
tatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
11912343 |
tatgaaaaggaaaaaagagccaagagttatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtt |
11912244 |
T |
|
| Q |
201 |
tgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagtgcaatggcttttttgtacttttgtagatattcatcattgactaaatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |||||| |||| |||||||||| ||||| ||||| |||||||| ||||| || |||| | |
|
|
| T |
11912243 |
tgcttgttgtatgaaactacgtggatcattggatggtaatgctttcgtgagctcaatggctttcttgtatttttgaagatattcgtcattaaccaaattt |
11912144 |
T |
|
| Q |
301 |
gctgcttgtctaacccttaagggttgagttgatgaaggaaatttgtaatctatgatttttgtggaatttggtggacaacaattaa |
385 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11912143 |
gctgcttgtcttacccttaagggttgatttgatgaaggaattttgtaatctatgatttttgtggaatttggtggacaacaattaa |
11912059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 11912023 - 11911929
Alignment:
| Q |
394 |
ggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagt |
488 |
Q |
| |
|
||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11912023 |
ggtgttgcacctaagggtagatccggtggaccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagt |
11911929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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