View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15601_low_9 (Length: 374)
Name: NF15601_low_9
Description: NF15601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15601_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 24 - 355
Target Start/End: Original strand, 42236267 - 42236598
Alignment:
| Q |
24 |
caagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaagagcagtggtgaactgagatggaaatggg |
123 |
Q |
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| T |
42236267 |
caagacccaaataggacaccaaacactacacatgtcacctccattgcaagccctagcaccagtaccagcaggagcagtggtgaactgagatggaaatggg |
42236366 |
T |
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| Q |
124 |
tggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttacttcgtgattacaaaaaagttcgtgatta |
223 |
Q |
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| T |
42236367 |
tggaaaactattgttggagccatggttgtttgagaagccagaatcaatgtaatgataaatgggataacttacttcgtgattacaaaaaagttcgtgatta |
42236466 |
T |
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| Q |
224 |
tgaatccaaatcagaatcatcaccacccaacaacaatagcaacaaagatcattttccttcttattggattctcaacaaacaacaacgtaaagaacaaaat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236467 |
tgaatccaaatcagaatcatcaccacccaacaacaatagcaacaaagatcattttccttcttattggattctcaacaaacaacaacgtaaagaacaaaat |
42236566 |
T |
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| Q |
324 |
cttccttctaatatggtttttgaagtttatca |
355 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42236567 |
cttccttctaatatggtttttgaagtttatca |
42236598 |
T |
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