View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15602_high_1 (Length: 689)

Name: NF15602_high_1
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15602_high_1
NF15602_high_1
[»] chr5 (21 HSPs)
chr5 (1-687)||(37704767-37705453)
chr5 (446-648)||(37437914-37438116)
chr5 (539-646)||(37700646-37700753)
chr5 (178-320)||(34599459-34599603)
chr5 (172-320)||(2143247-2143394)
chr5 (200-423)||(13953394-13953616)
chr5 (350-427)||(1629760-1629837)
chr5 (328-444)||(1629683-1629799)
chr5 (328-444)||(29532047-29532161)
chr5 (172-275)||(26325678-26325781)
chr5 (330-371)||(2143379-2143420)
chr5 (338-423)||(30384213-30384297)
chr5 (175-223)||(38458771-38458819)
chr5 (1-52)||(37699298-37699349)
chr5 (338-425)||(37704830-37704917)
chr5 (329-392)||(41232901-41232964)
chr5 (110-152)||(30384256-30384298)
chr5 (193-253)||(29531914-29531975)
chr5 (328-424)||(38458805-38458899)
chr5 (111-147)||(1630012-1630048)
chr5 (348-444)||(29531855-29531950)
[»] chr2 (16 HSPs)
chr2 (187-423)||(4558769-4559007)
chr2 (191-442)||(8198509-8198759)
chr2 (191-442)||(8203269-8203519)
chr2 (359-442)||(45385838-45385921)
chr2 (328-442)||(4923428-4923542)
chr2 (463-530)||(8265959-8266027)
chr2 (328-423)||(42053964-42054059)
chr2 (187-268)||(6739472-6739554)
chr2 (334-423)||(3289442-3289531)
chr2 (172-232)||(42054042-42054102)
chr2 (374-440)||(4558680-4558745)
chr2 (200-253)||(4923553-4923607)
chr2 (365-423)||(8198419-8198477)
chr2 (365-423)||(8203179-8203237)
chr2 (369-444)||(32546464-32546538)
chr2 (330-390)||(28358958-28359018)
[»] chr6 (22 HSPs)
chr6 (187-429)||(16419591-16419837)
chr6 (188-315)||(196111-196238)
chr6 (331-442)||(12458392-12458504)
chr6 (285-423)||(33547750-33547889)
chr6 (172-320)||(17411121-17411270)
chr6 (190-314)||(28477384-28477509)
chr6 (190-314)||(29789836-29789961)
chr6 (172-361)||(7004200-7004390)
chr6 (112-154)||(17411089-17411131)
chr6 (328-424)||(10544282-10544376)
chr6 (206-302)||(32548138-32548235)
chr6 (336-392)||(7202300-7202356)
chr6 (193-276)||(33547849-33547933)
chr6 (215-320)||(7202313-7202419)
chr6 (195-268)||(10544136-10544210)
chr6 (214-314)||(29693282-29693383)
chr6 (328-425)||(31314513-31314609)
chr6 (111-154)||(196244-196287)
chr6 (203-297)||(9405267-9405362)
chr6 (350-423)||(196063-196135)
chr6 (328-369)||(33547744-33547785)
chr6 (343-423)||(33547811-33547890)
[»] chr7 (27 HSPs)
chr7 (172-442)||(41331168-41331439)
chr7 (187-442)||(18128375-18128632)
chr7 (331-424)||(30551947-30552040)
chr7 (331-424)||(6589558-6589651)
chr7 (348-427)||(12422044-12422123)
chr7 (337-444)||(32804629-32804736)
chr7 (335-423)||(1532197-1532285)
chr7 (246-434)||(20389633-20389822)
chr7 (328-423)||(28003341-28003434)
chr7 (187-273)||(48447315-48447402)
chr7 (330-423)||(5755594-5755685)
chr7 (187-276)||(12264801-12264890)
chr7 (187-266)||(12422262-12422342)
chr7 (340-444)||(12422352-12422455)
chr7 (244-444)||(21920965-21921164)
chr7 (187-238)||(28002279-28002330)
chr7 (344-409)||(32918529-32918595)
chr7 (331-392)||(1532441-1532501)
chr7 (348-424)||(6586862-6586938)
chr7 (193-233)||(32857850-32857890)
chr7 (495-530)||(21595127-21595162)
chr7 (343-422)||(48447283-48447362)
chr7 (111-149)||(12422352-12422390)
chr7 (329-386)||(5762696-5762753)
chr7 (172-220)||(28002235-28002283)
chr7 (122-154)||(32857805-32857837)
chr7 (338-442)||(45477966-45478070)
[»] chr4 (27 HSPs)
chr4 (465-638)||(16840622-16840796)
chr4 (172-303)||(22519386-22519518)
chr4 (172-423)||(31095124-31095377)
chr4 (328-442)||(22519807-22519921)
chr4 (334-423)||(48194394-48194483)
chr4 (172-302)||(49291205-49291335)
chr4 (350-442)||(33617920-33618010)
chr4 (187-423)||(20141745-20141983)
chr4 (335-423)||(22889586-22889674)
chr4 (335-423)||(22941250-22941338)
chr4 (112-152)||(31095092-31095132)
chr4 (348-423)||(53769786-53769861)
chr4 (338-444)||(2323266-2323372)
chr4 (355-429)||(42676809-42676883)
chr4 (172-237)||(51580077-51580140)
chr4 (338-421)||(34013780-34013861)
chr4 (1-52)||(16840857-16840908)
chr4 (343-418)||(22519373-22519448)
chr4 (329-424)||(34717567-34717660)
chr4 (328-379)||(40070309-40070360)
chr4 (338-392)||(31095078-31095131)
chr4 (187-229)||(53769786-53769828)
chr4 (328-369)||(22519313-22519354)
chr4 (331-392)||(48194179-48194239)
chr4 (355-427)||(22519774-22519846)
chr4 (343-423)||(31095106-31095186)
chr4 (338-402)||(55368780-55368844)
[»] scaffold0591 (1 HSPs)
scaffold0591 (306-444)||(3866-4003)
[»] chr8 (20 HSPs)
chr8 (337-423)||(2277209-2277295)
chr8 (344-424)||(27532989-27533069)
chr8 (328-407)||(37064689-37064768)
chr8 (340-442)||(15907689-15907790)
chr8 (328-442)||(15907944-15908058)
chr8 (172-424)||(2510015-2510263)
chr8 (360-442)||(12807666-12807748)
chr8 (172-302)||(3806871-3807000)
chr8 (112-157)||(18080600-18080645)
chr8 (331-427)||(32566875-32566969)
chr8 (337-425)||(2967707-2967794)
chr8 (328-423)||(3806998-3807091)
chr8 (187-319)||(12189869-12190002)
chr8 (187-319)||(12434297-12434430)
chr8 (337-407)||(45445141-45445210)
chr8 (354-446)||(41123-41216)
chr8 (173-237)||(8453098-8453163)
chr8 (350-395)||(32566724-32566769)
chr8 (344-420)||(3806856-3806932)
chr8 (193-308)||(32566752-32566867)
[»] chr1 (23 HSPs)
chr1 (187-423)||(363615-363853)
chr1 (187-422)||(47726457-47726693)
chr1 (187-422)||(47747763-47747999)
chr1 (331-424)||(16554303-16554396)
chr1 (188-318)||(29954870-29955000)
chr1 (334-423)||(18470189-18470279)
chr1 (328-423)||(802251-802346)
chr1 (335-442)||(12656368-12656474)
chr1 (337-423)||(16026108-16026194)
chr1 (248-444)||(11016877-11017075)
chr1 (187-253)||(26706207-26706274)
chr1 (328-423)||(46530163-46530258)
chr1 (335-392)||(48130213-48130268)
chr1 (340-429)||(48130428-48130516)
chr1 (343-442)||(363806-363906)
chr1 (328-407)||(26706353-26706432)
chr1 (340-442)||(46530411-46530517)
chr1 (464-530)||(2125101-2125168)
chr1 (187-233)||(18470384-18470430)
chr1 (331-392)||(16026346-16026406)
chr1 (335-392)||(18470439-18470495)
chr1 (172-320)||(47600499-47600648)
chr1 (328-444)||(23808083-23808199)
[»] chr3 (12 HSPs)
chr3 (184-419)||(30534432-30534666)
chr3 (187-423)||(51265744-51265984)
chr3 (235-392)||(44291025-44291182)
chr3 (328-424)||(44291413-44291509)
chr3 (338-442)||(48200367-48200471)
chr3 (348-442)||(33291582-33291676)
chr3 (331-392)||(51265679-51265739)
chr3 (111-154)||(44291420-44291463)
chr3 (187-253)||(50898882-50898948)
chr3 (341-442)||(1662257-1662357)
chr3 (328-364)||(9343215-9343251)
chr3 (350-442)||(14747077-14747167)


Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 687
Target Start/End: Original strand, 37704767 - 37705453
Alignment:
Q  1 gtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcggnnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||           
T  37704767 gtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcggtttttta 37704866  T
Q  101 nnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcat 200  Q
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37704867 agattttttcgtatcacttgcgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcgt 37704966  T
Q  201 aacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37704967 aacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttgttacagttaaatagct 37705066  T
Q  301 tagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaat 400  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  37705067 tagaggacctaattggtacgaaaaaaattaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaatcttaaatgaccaat 37705166  T
Q  401 ttcttacaactaaataacttaaaagacttatggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705167 ttcttacaactaaataacttaaaagacttatggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttct 37705266  T
Q  501 ttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactct 600  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  37705267 ttaaatttataatttcttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgccatcggatatcgatactca 37705366  T
Q  601 actcgtgagttctacggtagaccacctttataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgat 687  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705367 actcgtgggttctacggtagaccacctttataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgat 37705453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 446 - 648
Target Start/End: Original strand, 37437914 - 37438116
Alignment:
Q  446 tttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaa 545  Q
    ||||||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| || ||| |||||| |||||||    
T  37437914 tttattttatgtgttttttttttctatggttcttaactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaa 37438013  T
Q  546 tgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcat 645  Q
    |||| |||||||||||||||||||||||| |  ||||||  |||||||||||||||||  |||||||||| ||| |||||||||||||  ||||||||||    
T  37438014 tgcactgagcatataaaaagaaaaagtattaagtgtcatatgatatcgatactctactattgagttctactgtaaaccacctttataagcggttcatcat 37438113  T
Q  646 gga 648  Q
    |||    
T  37438114 gga 37438116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 539 - 646
Target Start/End: Original strand, 37700646 - 37700753
Alignment:
Q  539 aagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggt 638  Q
    ||||||||||| |||||| ||||||||||||  ||| |  ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  37700646 aagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatattgatactctactcgtgagttctaccgtagaccacttttataagtggt 37700745  T
Q  639 tcatcatg 646  Q
    ||||||||    
T  37700746 tcatcatg 37700753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 320
Target Start/End: Original strand, 34599459 - 34599603
Alignment:
Q  178 ttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat-cc 275  Q
    |||||||| |||||||||||| |||  |||| ||| |||||||| |||||||||||| ||||||||| ||||||||| || ||||||||||| |||| ||    
T  34599459 ttagttatttaagtatttttcttaatgcttaagtcctttaagttgtttaattgtaacttttaggtccagaataacttacatttttaagatctaaaatacc 34599558  T
Q  276 ctcaatttcttacagttaaatagcttagaggacctaattggtacg 320  Q
    |  || || |||| |||||||| |||| | ||||||||| |||||    
T  34599559 caaaaattgttacggttaaataacttaaatgacctaattagtacg 34599603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 172 - 320
Target Start/End: Complemental strand, 2143394 - 2143247
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 270  Q
    |||||||||||  | | |||||||||| ||||| ||||||  ||||||||||||||||| |||||| ||| |||||||||||| ||  |||||||| | |    
T  2143394 aacaagttagtcctttcagtatttttcgtaacatttaggttttttaagttatttaattgaaactttgaggccccgaataacttacatgtttaagatataa 2143295  T
Q  271 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 320  Q
    ||||||  || || ||  ||||||||| |||| ||||||||||| |||||    
T  2143294 aatcccctaaattgtt--agttaaataacttaaaggacctaattagtacg 2143247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 423
Target Start/End: Original strand, 13953394 - 13953616
Alignment:
Q  200 taacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatag 298  Q
    ||||| ||| ||| ||||| |||||||| |||||||||  | ||  ||||||||| || ||||| | |||||||||||| || || ||||  |||||||     
T  13953394 taacatttaagtcctttaaattatttaactgtaacttttagaccttgaataacttacatttttagg-tctgaaatcccttaaatttttacgattaaataa 13953492  T
Q  299 cttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatca 398  Q
    |||| | ||| |||||||||||       ||||| ||| ||||||||| |||||||||||||||| ||| |||| |||| | ||||||||||||  | ||    
T  13953493 cttaaaagacgtaattggtacggaaaaacttaaaagacaaacttgttacaattaattaacttaaatgacttaagcggtatg-aaaaaacttaaaaaacca 13953591  T
Q  399 atttcttacaactaaataacttaaa 423  Q
    |||| ||| || |||| ||||||||    
T  13953592 atttattataattaaacaacttaaa 13953616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 1629837 - 1629760
Alignment:
Q  350 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    |||| ||||||||||||| ||| || |||| |||||||||||| |||| |||| |||||| ||| |||||||||||||    
T  1629837 ttaaataacttaaaggacttaattgctacggaaaaaacttaaaggatcgatttgttacaattaattaacttaaaagac 1629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 444
Target Start/End: Complemental strand, 1629799 - 1629683
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    |||||||| | | |||||| |||||||||||||||| ||||||| | ||||  ||||   |||||  |  ||||| |||||| ||||||||||||| |||    
T  1629799 ttaaaggatcgatttgttacaattaattaacttaaaagacctaatttgtacagaaaatttttaaagaacgaatttattacaattaaataacttaaaggac 1629700  T
Q  428 ttatggtgtaatttaac 444  Q
    || ||||||||||||||    
T  1629699 ttttggtgtaatttaac 1629683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 444
Target Start/End: Original strand, 29532047 - 29532161
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    ||||| ||||||||| ||| | ||||||||| ||||| | ||||||| |||| |||||| ||||| | ||||||| |||||| | |||||||| ||||||    
T  29532047 ttaaatgaccaactttttacagttaattaacataaagaagctaagtgatacg-aaaaaatttaaaggttcaatttgttacaattgaataactt-aaagac 29532144  T
Q  428 ttatggtgtaatttaac 444  Q
     |||| |||||||||||    
T  29532145 atatgatgtaatttaac 29532161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 26325678 - 26325781
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 271  Q
    ||||||||||| || ||||||||| |  |||||||||  || ||||| |||||||||| ||||||||| ||| |||||||||  | |||||| || ||||    
T  26325678 aacaagttagtcatttaagtatttattgtaacacttaaatcctttaaattatttaattataactttagatcctgaataacttatatttttaatatttgaa 26325777  T
Q  272 atcc 275  Q
    ||||    
T  26325778 atcc 26325781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 2143379 - 2143420
Alignment:
Q  330 aaaggaccaacttgttataattaattaacttaaaggacctaa 371  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  2143379 aaaggactaacttgttacaattaattaacttaaaggacctaa 2143420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 30384297 - 30384213
Alignment:
Q  338 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||| |||||| ||||||||| ||| |||||  |||| |||||||||||| ||  ||||| |||||| |||||||||||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacg-aaaaaacttaaaagacaaatttgttacaattaaataacttaaa 30384213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 38458819 - 38458771
Alignment:
Q  175 aagttagttatgtaagtatttttcataacacttaggtcgtttaagttat 223  Q
    |||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  38458819 aagttagtcatttaagtatttttcataacacttgggtcctttaagttat 38458771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37699298 - 37699349
Alignment:
Q  1 gtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 52  Q
    |||||||| | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699298 gtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 37704917 - 37704830
Alignment:
Q  338 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 425  Q
    |||||||||||||||| ||||||||| |||  ||||| |||| ||||| ||||||  | | |||| ||| || |||||||||||||||    
T  37704917 aacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaag 37704830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 392
Target Start/End: Complemental strand, 41232964 - 41232901
Alignment:
Q  329 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    |||| ||||||||| ||| |||||||| |||||||||| ||||||||||   ||||||||||||    
T  41232964 taaaagaccaacttattacaattaattgacttaaaggatctaagtggtatcaaaaaaacttaaa 41232901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  110 cgtatcacttacgtcatttaagttatttaattataacaagtta 152  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 29531914 - 29531975
Alignment:
Q  193 tttttcataacacttaggtcgtttaagttatttaattgtaa-ctttaggtcccgaataactt 253  Q
    |||||| || || ||| ||| ||||||||||||||||||||  |||||||||||||||||||    
T  29531914 tttttcgtatcatttacgtcatttaagttatttaattgtaatttttaggtcccgaataactt 29531975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 38458805 - 38458899
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    ||||| ||| ||||| ||| ||| || ||||||||| ||  ||||||||||| ||||||||||||  |  ||||| |||||| ||||||||||||||    
T  38458805 ttaaatgactaacttattacaataaaataacttaaaagatataagtggtacgaaaaaaacttaaa--actaatttattacaattaaataacttaaaa 38458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
Q  111 gtatcacttacgtcatttaagttatttaattataaca 147  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1630048 gtatcacttacgtcttttaagttatttaatcataaca 1630012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 444
Target Start/End: Complemental strand, 29531950 - 29531855
Alignment:
Q  348 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 444  Q
    |||||| ||||||||| ||| ||| || |||| |||||||||||| ||  ||||| |||||| ||||||||||||| ||| | |  |||||||||||    
T  29531950 aattaaataacttaaatgacgtaaatgatacg-aaaaaacttaaaggactaatttattacaattaaataacttaaatgacatctcatgtaatttaac 29531855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 187 - 423
Target Start/End: Original strand, 4558769 - 4559007
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 285  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||| |  |||||||||||| ||||||||||| |||| |||||| |  |    
T  4558769 taagtatttttcgtaacacttaggtcttttaatttatttaattgtaacttttaggccatgaataacttgcatttttaagatctaaaatacctcaaatagt 4558868  T
Q  286 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggta-cgtaaa 383  Q
    ||| ||||||||||||| |||||||||||||||| |       |||||||| |||||||||| ||||||||||| ||||| |||||||| ||| |  |||    
T  4558869 tacggttaaatagcttaaaggacctaattggtacagacaaaacttaaaggaacaacttgttacaattaattaacataaagtacctaagttgtaccaaaaa 4558968  T
Q  384 aaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||| ||||||||| |||||| |||||||||||||    
T  4558969 aaacttaaa-gatcaatttattacaattaaataacttaaa 4559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 191 - 442
Target Start/End: Original strand, 8198509 - 8198759
Alignment:
Q  191 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttaca 289  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||  || || ||||     
T  8198509 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatcccctaaattgttacg 8198606  T
Q  290 gttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaact 388  Q
    |||||||| |||| |||||||||||||||||        ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||    
T  8198607 gttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaact 8198706  T
Q  389 taaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    |||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8198707 taaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8198759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 191 - 442
Target Start/End: Original strand, 8203269 - 8203519
Alignment:
Q  191 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttaca 289  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||  || || ||||     
T  8203269 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatcccctaaattgttacg 8203366  T
Q  290 gttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaact 388  Q
    |||||||| |||| |||||||||||||||||        ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||    
T  8203367 gttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaact 8203466  T
Q  389 taaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    |||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8203467 taaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8203519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 45385921 - 45385838
Alignment:
Q  359 ttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    ||||||||| ||||||||||| |||||||||||| |  |||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  45385921 ttaaaggacgtaagtggtacgaaaaaaacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaattta 45385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 328 - 442
Target Start/End: Complemental strand, 4923542 - 4923428
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    ||||||||  ||||| ||| |||| |||||| ||||  |||||| ||||||| ||||||| |||||||||||||| ||| || |||| ||||||| ||||    
T  4923542 ttaaaggattaacttattacaatttattaacgtaaaaaacctaaatggtacggaaaaaacataaatgatcaatttattataattaaaaaacttaagagac 4923443  T
Q  428 ttatggtgtaattta 442  Q
     |  |||||||||||    
T  4923442 atccggtgtaattta 4923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 463 - 530
Target Start/End: Complemental strand, 8266027 - 8265959
Alignment:
Q  463 ttttttgtatggttcttaactaaactacaaa-aatttctttaaatttataattttttcaaagtttgtta 530  Q
    ||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  8266027 tttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgtta 8265959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 42054059 - 42053964
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||| ||||||||| ||||||  ||||||||| ||||||||| ||   | |||||||||| ||| || || ||| ||||||||||||||||    
T  42054059 ttaaaggactaacttgttaaaattaaacaacttaaagaacctaagtgatataaacaaaacttaaaggattaacttattataactaaataacttaaa 42053964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 6739472 - 6739554
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgt-aactttaggtcccgaataacttgcagttttaagatct 268  Q
    |||||||||||  ||||| ||||||| |||||||||||||||||| ||||||| | | | |||||||| || |||||||||||    
T  6739472 taagtattttttgtaacatttaggtcatttaagttatttaattgtaaactttaagcctctaataacttacatttttaagatct 6739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 423
Target Start/End: Original strand, 3289442 - 3289531
Alignment:
Q  334 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||||||| |||||||| | ||||| ||  |||||| |||  |||||||||||| || |||||| |||||| ||||||| |||||    
T  3289442 gaccaacttgttacaattaattcaattaaaagatttaagtgatacaaaaaaaacttaaaagaccaatttattacaattaaataatttaaa 3289531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 42054042 - 42054102
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgta 232  Q
    |||||||||||  | |||||||||||| || |||||||||  |||||||||||||||||||    
T  42054042 aacaagttagtcctttaagtatttttcctatcacttaggttctttaagttatttaattgta 42054102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 4558745 - 4558680
Alignment:
Q  374 ggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 440  Q
    |||||| |||||||||||| || |||||| |||||| |||||||||||| ||| |||| ||||||||    
T  4558745 ggtacgaaaaaaacttaaa-gaccaatttattacaattaaataacttaagagaattatcgtgtaatt 4558680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 4923553 - 4923607
Alignment:
Q  200 taacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 253  Q
    ||||||||||||  ||||||||||||||||| ||| ||||||| |||||||||||    
T  4923553 taacacttaggtactttaagttatttaattgcaacttttaggttccgaataactt 4923607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 8198477 - 8198419
Alignment:
Q  365 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8198477 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 8203237 - 8203179
Alignment:
Q  365 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8203237 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 444
Target Start/End: Original strand, 32546464 - 32546538
Alignment:
Q  369 taagtggtacgtaaaa-aacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 444  Q
    ||||||||||| |||| |||||||||||||||||| |||| | |||| ||||||||  || | ||||||||||||||    
T  32546464 taagtggtacgaaaaataacttaaatgatcaatttattacgattaaaaaacttaaa--acctctggtgtaatttaac 32546538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 28358958 - 28359018
Alignment:
Q  330 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaactta 390  Q
    ||||||||||| ||||| | ||||||||||||||||| |||| || |||| | ||||||||    
T  28358958 aaaggaccaacctgttacatttaattaacttaaaggaactaattgatacgaacaaaactta 28359018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 187 - 429
Target Start/End: Complemental strand, 16419837 - 16419591
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 285  Q
    ||||||||| || ||||||||||||| ||||||||||||||||| ||| |||||| ||| |||||||| || || |||||||| ||||||||||| || |    
T  16419837 taagtatttgtcgtaacacttaggtcttttaagttatttaattgaaacttttaggccccaaataacttacatttctaagatctaaaatccctcaaattgt 16419738  T
Q  286 tacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac---gtaa 382  Q
    ||| |||||||| |||| |||| | ||||||||||       ||||| ||||||||||||| |||||||||||||||| || |||| ||||||     ||    
T  16419737 tacggttaaataacttaaaggatcaaattggtacgaaaaaacttaaatgaccaacttgttacaattaattaacttaaatgatctaattggtacaaaagaa 16419638  T
Q  383 aaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 429  Q
    || |||| |||||||||||| |||||| ||||||||||||| |||||    
T  16419637 aatacttcaatgatcaatttgttacaattaaataacttaaaggactt 16419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 196238 - 196111
Alignment:
Q  188 aagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttctt 286  Q
    |||||| ||||  |||||||||||| |||||||||||||||||||||||| | | || ||||||||| || ||||||||| |||||| |||||| || ||    
T  196238 aagtatatttcgaaacacttaggtc-tttaagttatttaattgtaacttttaagccctgaataacttacatttttaagatatgaaatacctcaaattgtt 196140  T
Q  287 acagttaaatagcttagaggacctaattg 315  Q
    || ||||| || |||| ||||||||||||    
T  196139 acggttaagtaacttaaaggacctaattg 196111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 331 - 442
Target Start/End: Original strand, 12458392 - 12458504
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 429  Q
    ||||||||||||||| ||||| ||||||||||||||||||||  |||| | ||||||||||||  | ||| || |||||| ||||||||||||| |||||    
T  12458392 aaggaccaacttgttttaatttattaacttaaaggacctaagaagtacgggaaaaaacttaaagtaccaaattgttacaattaaataacttaaaggactt 12458491  T
Q  430 atggtgtaattta 442  Q
     | ||||||||||    
T  12458492 ctagtgtaattta 12458504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 285 - 423
Target Start/End: Complemental strand, 33547889 - 33547750
Alignment:
Q  285 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaa- 383  Q
    ||||| ||||||| |||| ||||||||| ||||| |       ||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||  |||     
T  33547889 ttacaattaaataacttaaaggacctaaatggtatgaaaaaacttaaaagacaaacttgttacaattaattaacttaaaggacataagtggaacaaaaat 33547790  T
Q  384 aaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||| || |||||| |||||| |||||||||||||    
T  33547789 aaacttaaaggaccaatttgttacaattaaataacttaaa 33547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 172 - 320
Target Start/End: Original strand, 17411121 - 17411270
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtc-ccgaataacttgcagttttaagatctga 270  Q
    |||||||||||  | ||| |||||||| ||| || || ||| ||| ||||||||||||||||| ||  ||| ||||||||||| || |||||||||||||    
T  17411121 aacaagttagtcttttaaatatttttcgtaatacataagtcttttgagttatttaattgtaacgtttagtctccgaataacttacatttttaagatctga 17411220  T
Q  271 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 320  Q
    |||||| ||| || ||||  ||||||| |||| || || |||||||||||    
T  17411221 aatcccccaaattattacgattaaataacttaaagtacataattggtacg 17411270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 28477509 - 28477384
Alignment:
Q  190 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttac 288  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| ||||| |  || || ||||    
T  28477509 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacatttttaagatctaaaatcgcctaaattattac 28477410  T
Q  289 agttaaatagcttagaggacctaatt 314  Q
    |||| |||| |||| || ||||||||    
T  28477409 agttcaataacttaaagaacctaatt 28477384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 29789961 - 29789836
Alignment:
Q  190 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttac 288  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| ||||| |  || || ||||    
T  29789961 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacaattttaagatctaaaatcgcctaaattattac 29789862  T
Q  289 agttaaatagcttagaggacctaatt 314  Q
    |||| |||| |||| || ||||||||    
T  29789861 agttcaataacttaaagaacctaatt 29789836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 361
Target Start/End: Original strand, 7004200 - 7004390
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 270  Q
    |||||||||||  | |||||||||||  || |||||| ||| ||||||||||||||||| ||| ||||   || |||||||||  | ||||||||||| |    
T  7004200 aacaagttagtcctttaagtattttttgtatcacttatgtc-tttaagttatttaattgcaacatttaaaccctgaataacttatacttttaagatctaa 7004298  T
Q  271 aatccctcaatttcttacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaactta 361  Q
    |||  ||||| || |||| |||||||| |||| || ||||||||||||| |        ||||||| |||||||||||||||||| ||||||    
T  7004299 aatttctcaaattgttacggttaaataacttaaagaacctaattggtacagagaaaacataaaggatcaacttgttataattaataaactta 7004390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  112 tatcacttacgtcatttaagttatttaattataacaagttagt 154  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 10544282 - 10544376
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    ||||| || |||||| ||||||||||||||||||| ||| |||| | ||||| ||||||||||||   ||||||| |||||  ||||||||||||||    
T  10544282 ttaaatgatcaacttattataattaattaacttaatggatctaactagtacgaaaaaaacttaaa--gtcaatttgttacagataaataacttaaaa 10544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 32548235 - 32548138
Alignment:
Q  206 ttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagctta 302  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||| ||| || ||||||||| | |||| || ||| || |||| |||||||| ||||    
T  32548235 ttaggtcctttaagttatttaattgtaacttttagatcccgaatagcttacatttttaagatttaaaataccgcaaattgttacggttaaataactta 32548138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 7202356 - 7202300
Alignment:
Q  336 ccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  7202356 ccaacatgttacaattaattaacataaaggacctaaatggtacgaaaaaaacttaaa 7202300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 33547849 - 33547933
Alignment:
Q  193 tttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccc 276  Q
    ||||||||| || ||||||| ||||||||||||||||||||| |||| ||  ||||||||||  | ||||||| |||||||||||    
T  33547849 tttttcataccatttaggtcctttaagttatttaattgtaacttttaagtttcgaataacttaaatttttaaggtctgaaatccc 33547933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 7202419 - 7202313
Alignment:
Q  215 ttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaat 313  Q
    |||||||||||||||||||| |||||| ||||||||||||  | ||||||||||| ||||| | |||  | ||||| |||| || | || |||||||||     
T  7202419 ttaagttatttaattgtaacttttaggccccgaataacttaaatttttaagatctaaaatctcccaacatgttacaattaattaacataaaggacctaaa 7202320  T
Q  314 tggtacg 320  Q
    |||||||    
T  7202319 tggtacg 7202313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 10544136 - 10544210
Alignment:
Q  195 tttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatct 268  Q
    |||| ||||||||||||| ||||||||| ||||||||||| ||||||||  |||||| || || |||||||||||    
T  10544136 tttcgtaacacttaggtcatttaagttagttaattgtaacttttaggtcttgaataatttacatttttaagatct 10544210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 314
Target Start/End: Complemental strand, 29693383 - 29693282
Alignment:
Q  214 tttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaa 312  Q
    ||||| ||||||||| |||||||| ||| |||||||||||| || ||||||||||| ||||| |  || || |||||||| |||| |||| || ||||||    
T  29693383 tttaaattatttaatcgtaacttttaggacccgaataacttacatttttaagatctaaaatcgcctaaattattacagttcaataacttaaagaacctaa 29693284  T
Q  313 tt 314  Q
    ||    
T  29693283 tt 29693282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 328 - 425
Target Start/End: Complemental strand, 31314609 - 31314513
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 425  Q
    ||||| ||| || ||||||||||||| |||||||||  || |||||| |||  ||||||||||||||||||| || ||| || ||||||||| |||||    
T  31314609 ttaaatgactaatttgttataattaaataacttaaaa-acataagtgatactgaaaaaacttaaatgatcaacttgttataattaaataactcaaaag 31314513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  111 gtatcacttacgtcatttaagttatttaattataacaagttagt 154  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 9405362 - 9405267
Alignment:
Q  203 cacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaata 297  Q
    ||||||| || |||||||||||||||||||| || ||  | ||||||||||   | |||||||||||||||| |||||| || |||| ||||||||    
T  9405362 cacttagatcctttaagttatttaattgtaatttataaatgccgaataactaaaatttttaagatctgaaattcctcaaattgttacggttaaata 9405267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 196135 - 196063
Alignment:
Q  350 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||| ||||||||||||||||| || |||  ||||||||||||| |||||||| |||||| ||| ||| |||||    
T  196135 ttaagtaacttaaaggacctaattgatactgaaaaaacttaaat-atcaatttgttacaattaattaatttaaa 196063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 33547785 - 33547744
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacct 369  Q
    |||||||||||| |||||| |||||| |||||||||||||||    
T  33547785 ttaaaggaccaatttgttacaattaaataacttaaaggacct 33547744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 423
Target Start/End: Complemental strand, 33547890 - 33547811
Alignment:
Q  343 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||| |||||| ||||||||||||||||| ||||| | |||||||||||| ||  || || |||||| ||| |||||||||    
T  33547890 gttacaattaaataacttaaaggacctaaatggtatg-aaaaaacttaaaagacaaacttgttacaattaattaacttaaa 33547811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 172 - 442
Target Start/End: Original strand, 41331168 - 41331439
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 270  Q
    |||||||||||  | ||| ||||||||||| |||||||||| |||||||||||||||| ||||||| ||||  ||||||||||  | ||||| |||||      
T  41331168 aacaagttagtagtttaaatatttttcatagcacttaggtc-tttaagttatttaattataacttttaggtatcgaataacttcaatttttaggatctag 41331266  T
Q  271 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacct 369  Q
    ||||||  || || |||| |||||||| |||| | ||||| ||||||||         |||||| ||||||||||||||||| ||||||||||| || ||    
T  41331267 aatccccaaaattgttacggttaaataacttaaatgacctcattggtacatgaaaaacttaaagaaccaacttgttataatttattaacttaaatgagct 41331366  T
Q  370 aagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    | ||||||||  ||||||||||||||||||||| |||||| ||||||||||||| |||||||| | |||||||    
T  41331367 aggtggtacgagaaaaacttaaatgatcaatttattacaattaaataacttaaatgacttatgatataattta 41331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 187 - 442
Target Start/End: Original strand, 18128375 - 18128632
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttct 285  Q
    |||||||| ||| |||||||||| || ||||| || |||||||||||||||    ||  ||||||||| || |||||||||||||||| |  ||| || |    
T  18128375 taagtattcttcgtaacacttagatcctttaaattttttaattgtaacttttaaaccttgaataacttacatttttaagatctgaaattcgccaaattgt 18128474  T
Q  286 tacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 384  Q
    ||  |||||||| |||| |||| |||||| |||||        |||||| |||||||| ||| ||||||||||||||||| |||||||| ||||| ||||    
T  18128475 tatggttaaataacttaaaggatctaattcgtacgaaaaaaaattaaagcaccaacttattacaattaattaacttaaagaacctaagtagtacg-aaaa 18128573  T
Q  385 aactt-aaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    ||||| ||| || |||||| |||||  ||||||| ||||| ||| ||||||||||||||    
T  18128574 aacttaaaaggaccaatttattacatttaaataatttaaaggacctatggtgtaattta 18128632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 30551947 - 30552040
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  30551947 aaggaccaacttgttacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 30552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 331 - 424
Target Start/End: Original strand, 6589558 - 6589651
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||||||||  |||||||||||| ||||||||| |||||| ||||| ||||||||    
T  6589558 aaggaccaacttattacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggatcaatttattacaattaaattacttaaaa 6589651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 348 - 427
Target Start/End: Complemental strand, 12422123 - 12422044
Alignment:
Q  348 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||| | |||||||||||||||    
T  12422123 aattaatttacttaaaggacctaagtggtatgaaaaaaacttaaatgaccaatttattacaatttaataacttaaaagac 12422044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 444
Target Start/End: Original strand, 32804629 - 32804736
Alignment:
Q  337 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 436  Q
    |||||||||  |||||||||||||||| ||| ||||| ||| | ||||||| |||| ||||||||| |||||| |||||| | |||||||||| ||||||    
T  32804629 caacttgttgcaattaattaacttaaatgacttaagttgtatgaaaaaaacctaaaagatcaatttattacaattaaatatcctaaaagacttgtggtgt 32804728  T
Q  437 aatttaac 444  Q
    ||||||||    
T  32804729 aatttaac 32804736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 335 - 423
Target Start/End: Complemental strand, 1532285 - 1532197
Alignment:
Q  335 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||||||||||| |||| |||||||||||||||||| |||||  ||||||  ||||||||||| || |||||| |||||||||||||    
T  1532285 accaacttgttatagttaaataacttaaaggacctaagaggtacaaaaaaaatgtaaatgatcaacttattacaattaaataacttaaa 1532197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 246 - 434
Target Start/End: Complemental strand, 20389822 - 20389633
Alignment:
Q  246 aataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgtt 345  Q
    |||||||| || ||||||||||| |||| |  ||| || ||||||||||||| |||| |||| |||||| |||||        | || ||||||||||||    
T  20389822 aataacttacatttttaagatctaaaattcgccaaattgttacagttaaataacttaaaggatctaattcgtacgaaaaaaacttaaagaccaacttgtt 20389723  T
Q  346 ataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 434  Q
    | ||||||||||||||||| | |||||| |||||  ||||||||||||  |  | ||| |||||  ||||||||||||||||| ||||||    
T  20389722 acaattaattaacttaaagcatctaagtagtacgaaaaaaaacttaaagaactactttgttacatttaaataacttaaaagacctatggt 20389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 28003341 - 28003434
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||| || |||||| || |||||| ||||||| |||||    
T  28003341 ttaaaggatcaacttgttacatttaattaacttaaaggacctaattggtacg-aaaaaactt-aacgatcaacttgttacaattaaataatttaaa 28003434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 48447315 - 48447402
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat 273  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||| |||| | ||  |||||||| || ||||||||||| ||||    
T  48447315 taagtatttttcgtaacgcttaggtcctttaagttatttaattgtaacttttatgcccaaaataacttacatttttaagatctaaaat 48447402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 423
Target Start/End: Complemental strand, 5755685 - 5755594
Alignment:
Q  330 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||||||  ||||| ||||| |  |||||| |||||| |||||||||||||    
T  5755685 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg--aaaaaattaaagggccaatttgttacaattaaataacttaaa 5755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 12264801 - 12264890
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaaatccc 276  Q
    |||||||||||| || |||||||||| || ||||||||||| ||||||||| || |  ||||||||| || ||| ||||| |||||||||    
T  12264801 taagtatttttcgtaccacttaggtctttcaagttatttaagtgtaacttttggccatgaataacttacattttaaagatttgaaatccc 12264890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 12422342 - 12422262
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagat 266  Q
    |||||||| ||  |||||||||  || ||||||||||||||||||||| |||||||||||||||||||  | |||||||||    
T  12422342 taagtattgtttgtaacacttaaatcctttaagttatttaattgtaacttttaggtcccgaataacttatacttttaagat 12422262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 444
Target Start/End: Original strand, 12422352 - 12422455
Alignment:
Q  340 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 439  Q
    ||||||| |||||| ||||||||| ||| |||||| |||  |||||||||||| ||| ||||| |||||| |||||||||||||  | ||  ||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgataca-aaaaaacttaaaggatgaatttgttacaattaaataacttaaagaaattccggtgtaat 12422450  T
Q  440 ttaac 444  Q
    |||||    
T  12422451 ttaac 12422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 444
Target Start/End: Original strand, 21920965 - 21921164
Alignment:
Q  244 cgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaactt 342  Q
    |||||||||| || ||||||| ||| |||| || ||| || |||  |||||||| |||| ||||||||||| |||||        |||||  | ||||||    
T  21920965 cgaataacttacatttttaaggtctaaaattccccaaatttttatggttaaataacttaaaggacctaattagtacggaaaaaacttaaataaacaactt 21921064  T
Q  343 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    |||| | ||||||||||||||| || |||||||||   |||||||||||||||  ||||  ||| |  ||||||||||||| |||||||| |||||||||    
T  21921065 gttacagttaattaacttaaag-acataagtggtaaa-aaaaaacttaaatgacaaattagttatagttaaataacttaaatgacttatgatgtaattta 21921162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 28002279 - 28002330
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttta 238  Q
    |||||| |||||||| |||||||||| |||||||| ||||||||||||||||    
T  28002279 taagtacttttcataccacttaggtcctttaagttgtttaattgtaacttta 28002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 409
Target Start/End: Complemental strand, 32918595 - 32918529
Alignment:
Q  344 ttataattaattaacttaaaggacctaagtggtacgtaa-aaaacttaaatgatcaatttcttacaa 409  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||| ||||||    
T  32918595 ttataattaattaacttaaaggagctaagtgatacgaaataaaactcaaaagatcaatttattacaa 32918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 1532441 - 1532501
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  1532441 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 1532501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 6586938 - 6586862
Alignment:
Q  348 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    |||| ||||||||||| ||||||||| ||||  |||||| ||||  ||||||||| |||||| ||||| ||||||||    
T  6586938 aattgattaacttaaatgacctaagtagtaccaaaaaaatttaagagatcaatttattacaattaaattacttaaaa 6586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 32857850 - 32857890
Alignment:
Q  193 tttttcataacacttaggtcgtttaagttatttaattgtaa 233  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  32857850 tttttcgtaacacttaggtcttttaagttatttaattgtaa 32857890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 21595162 - 21595127
Alignment:
Q  495 atttctttaaatttataattttttcaaagtttgtta 530  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21595162 atttctttaaattcataattttttcaaagtttgtta 21595127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 48447362 - 48447283
Alignment:
Q  343 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 422  Q
    |||| |||||| |||||||||||||||||| | |||| |||| |||||||  |  ||||| |||||| ||||||||||||    
T  48447362 gttacaattaaataacttaaaggacctaagcgttacgaaaaatacttaaagtactaatttgttacaattaaataacttaa 48447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  111 gtatcacttacgtcatttaagttatttaattataacaag 149  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 5762753 - 5762696
Alignment:
Q  329 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa 386  Q
    ||||| |||||||||||| ||||||||||| || |  |||||||||||||| ||||||    
T  5762753 taaagaaccaacttgttacaattaattaacatatattacctaagtggtacggaaaaaa 5762696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 28002235 - 28002283
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagt 220  Q
    |||||||||||  | ||||||||||||||| |||||||||| |||||||    
T  28002235 aacaagttagtcctttaagtatttttcataccacttaggtcatttaagt 28002283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
Q  122 gtcatttaagttatttaattataacaagttagt 154  Q
    |||||||||||||||||||| ||||||||||||    
T  32857805 gtcatttaagttatttaattgtaacaagttagt 32857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 338 - 442
Target Start/End: Original strand, 45477966 - 45478070
Alignment:
Q  338 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 437  Q
    ||||||||| || | ||||||||| ||| |||||||| ||   ||||||  | |||||||||||| |||||| ||||||| ||||||||  |  ||||||    
T  45477966 aacttgttacaacttattaacttatagggcctaagtgataaaaaaaaaaaattaatgatcaatttattacaattaaataatttaaaagatatgaggtgta 45478065  T
Q  438 attta 442  Q
    |||||    
T  45478066 attta 45478070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 465 - 638
Target Start/End: Complemental strand, 16840796 - 16840622
Alignment:
Q  465 ttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaa 564  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | ||||||||||||    
T  16840796 ttttttatagtttttaactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaa 16840697  T
Q  565 gaaaaagtatcagatgtcatcggata-tcgatactctactcgtgagttctacggtagaccacctttataattggt 638  Q
    |||||||||| |  ||||||  |||| | ||||||||||||||||||||||  ||| ||||| ||||||| ||||    
T  16840696 gaaaaagtattaagtgtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggt 16840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 22519386 - 22519518
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 270  Q
    |||||||||||  | |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||    
T  22519386 aacaagttagtcctttaagtatttttcgtaacacttaggtcctttaagttatttaattgtaacttttaggtcccaaataacttacatttttaagatctga 22519485  T
Q  271 aatccctcaatttcttacagttaaatagcttag 303  Q
    |||||| ||| ||  ||| |||||||| |||||    
T  22519486 aatcccccaaattgctacggttaaataacttag 22519518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 172 - 423
Target Start/End: Original strand, 31095124 - 31095377
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 270  Q
    ||||||||| | || |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||||||  ||||||||| || |||||||||||||    
T  31095124 aacaagttaatcatttaagtattgtttgtaacacttaggttctttaagttatttaattgtaacttttaggtcttgaataacttacatttttaagatctga 31095223  T
Q  271 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggaccta 370  Q
    |||||   || ||  ||  || |||||||||| | ||||| ||||||| |       ||| ||||  ||||||||| || ||||||||||||| ||||||    
T  31095224 aatcctaaaaattgatatggtaaaatagcttaaatgaccttattggtaggaaaaaacttataggattaacttgttacaactaattaacttaaaagaccta 31095323  T
Q  371 agtggtacgtaaaaaacttaaat-gatcaatttcttacaactaaataacttaaa 423  Q
    | ||||||| ||| || |||| | ||  ||||| |||||| |||||||||||||    
T  31095324 aatggtacgaaaataatttaagtggacaaatttattacaattaaataacttaaa 31095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 328 - 442
Target Start/End: Original strand, 22519807 - 22519921
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga 426  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || || |||||| |||||| ||||||| || |||||    
T  22519807 ttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataa-tttaaaga 22519905  T
Q  427 cttatggtgtaattta 442  Q
    | | ||||||||||||    
T  22519906 cctctggtgtaattta 22519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 423
Target Start/End: Original strand, 48194394 - 48194483
Alignment:
Q  334 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||||||| | |||| |||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| |||||||||||||    
T  48194394 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 48194483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 172 - 302
Target Start/End: Complemental strand, 49291335 - 49291205
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 271  Q
    ||||||||||| || ||||||||||| |||||| ||| ||| ||||||||||||||||||||||||    ||||| |||||| || ||| ||||||||||    
T  49291335 aacaagttagtcatttaagtattttttataacatttaagtcttttaagttatttaattgtaacttttaaacccgagtaacttacattttgaagatctgaa 49291236  T
Q  272 atccctcaatttcttacagttaaatagctta 302  Q
    || ||| || || ||||  ||||||| ||||    
T  49291235 attcctgaaattgttacgattaaataactta 49291205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 350 - 442
Target Start/End: Original strand, 33617920 - 33618010
Alignment:
Q  350 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    ||||||||||||||||||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||||| ||| | | ||||||||||    
T  33617920 ttaattaacttaaaggacctaagcggtacg--aaaaacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaattta 33618010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 423
Target Start/End: Complemental strand, 20141983 - 20141745
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttc 284  Q
    |||||||||||| |||  |||| ||| |||||||| ||||||||||| ||| ||| ||  |||||||| || ||||||||||| |||| |||  || ||     
T  20141983 taagtatttttcgtaatgcttaagtc-tttaagttgtttaattgtaatttttaggcccataataacttacatttttaagatctaaaatacccaaaaatta 20141885  T
Q  285 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 384  Q
    |||| |||||||| |||| | ||||||||| |||||        | || ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||    
T  20141884 ttacggttaaataacttaaatgacctaattagtacgaataaaacttaaagaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaa 20141785  T
Q  385 a-acttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    | |||||||  | | | || |||||| |||||||||||||    
T  20141784 agacttaaagaacctacttattacaattaaataacttaaa 20141745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 423
Target Start/End: Complemental strand, 22889674 - 22889586
Alignment:
Q  335 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22889674 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 423
Target Start/End: Complemental strand, 22941338 - 22941250
Alignment:
Q  335 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22941338 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  112 tatcacttacgtcatttaagttatttaattataacaagtta 152  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 423
Target Start/End: Original strand, 53769786 - 53769861
Alignment:
Q  348 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||| ||| ||||| ||||||||||||| | |||| ||||||||||| ||||| |||||| ||||||| |||||    
T  53769786 aattaaataatttaaaagacctaagtggtatgaaaaatacttaaatgattaatttattacaattaaataatttaaa 53769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 2323372 - 2323266
Alignment:
Q  338 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 437  Q
    ||||||||| ||||||||||||| || || |||  ||||||  |||||||||||| |   ||||| |||||| ||||||| ||||| ||||| || ||||    
T  2323372 aacttgttacaattaattaacttgaaagaactacatggtaccaaaaaaacttaaagggctaatttgttacaattaaataatttaaaggacttttgatgta 2323273  T
Q  438 atttaac 444  Q
    |||||||    
T  2323272 atttaac 2323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 429
Target Start/End: Original strand, 42676809 - 42676883
Alignment:
Q  355 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 429  Q
    ||||||||| |||||||||| |||| ||||||| |||| ||| || || |||||| ||| |||||||||||||||    
T  42676809 taacttaaatgacctaagtgatacgaaaaaaacataaaggattaacttgttacaattaattaacttaaaagactt 42676883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 51580140 - 51580077
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt 237  Q
    |||||||||||| | |||||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  51580140 aacaagttagttct-taagtatttttcgtaacatttaggtc-tttacgttatttaattgtaacttt 51580077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 34013780 - 34013861
Alignment:
Q  338 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactta 421  Q
    ||||| ||||| |||||||| ||||||||| ||||| ||| | |||||  ||||||||| ||||| |||||| |||||||||||    
T  34013780 aacttattatatttaattaatttaaaggacttaagtagtatgaaaaaa--ttaaatgattaatttgttacaattaaataactta 34013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16840908 - 16840857
Alignment:
Q  1 gtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 52  Q
    |||||||||| |||||||||||||||| |||| | | |||||||||||||||    
T  16840908 gtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc 16840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 22519448 - 22519373
Alignment:
Q  343 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataac 418  Q
    |||| |||||| |||||||||||||||||||| |||| |||| ||||||| ||  || || |||||| ||||||||    
T  22519448 gttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgttacaattaaataac 22519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 424
Target Start/End: Original strand, 34717567 - 34717660
Alignment:
Q  329 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    |||| ||| ||||||||  |||||||||||||||| ||| || ||| |||| ||||||||||||| |  ||||| |||||| ||||||||||||||    
T  34717567 taaaagacaaacttgtttcaattaattaacttaaaagacttaggtgatacg-aaaaaacttaaat-acaaatttattacaattaaataacttaaaa 34717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 40070309 - 40070360
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg 379  Q
    |||||||| |||||||||||| |||||||||||||| || ||||||| ||||    
T  40070309 ttaaaggatcaacttgttatatttaattaacttaaatgatctaagtgatacg 40070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 31095131 - 31095078
Alignment:
Q  338 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    |||||||||||||||| ||||||||||||| |||||| || | ||||||||||||    
T  31095131 aacttgttataattaaataacttaaaggacgtaagtgatatg-aaaaaacttaaa 31095078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 53769828 - 53769786
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaatt 229  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  53769828 taagtatttttcataccacttaggtcttttaaattatttaatt 53769786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 22519354 - 22519313
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacct 369  Q
    ||||||||||| | |||||||||||| |||||||||||||||    
T  22519354 ttaaaggaccagcatgttataattaactaacttaaaggacct 22519313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 48194239 - 48194179
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    |||||||||||||||| | |||| ||||||||||  | ||||||||||| ||||||||||||    
T  48194239 aaggaccaacttgttacagttaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 48194179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 22519774 - 22519846
Alignment:
Q  355 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    ||||||||| ||||||| || |||  |||||||||||| |||||| || ||| || ||| |||||||||||||    
T  22519774 taacttaaatgacctaattgatacagaaaaaacttaaaggatcaacttgttataattaattaacttaaaagac 22519846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 343 - 423
Target Start/End: Complemental strand, 31095186 - 31095106
Alignment:
Q  343 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||| |||||| |||||||||| ||||||||| |||  | || ||||||||||| || || ||| || |||||||||||||    
T  31095186 gttacaattaaataacttaaagaacctaagtgttacaaacaatacttaaatgattaacttgttataattaaataacttaaa 31095106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 55368844 - 55368780
Alignment:
Q  338 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaattt 402  Q
    ||||| ||| || ||| ||| ||||||||  ||| ||||||| ||||||||||||||||||||||    
T  55368844 aacttattacaaataaataatttaaaggatataaatggtacgaaaaaaacttaaatgatcaattt 55368780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 306 - 444
Target Start/End: Original strand, 3866 - 4003
Alignment:
Q  306 gacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttctt 405  Q
    |||||||||||||||       ||||||||||||||||||| ||| ||||||||||||| |||| ||||||| | ||| |||||||||||||||||| ||    
T  3866 gacctaattggtacgaaaaaacttaaaggaccaacttgttacaatcaattaacttaaag-acctcagtggtaggaaaataacttaaatgatcaatttatt 3964  T
Q  406 acaactaaataacttaaaagacttatggtgtaatttaac 444  Q
    |||| |||||||| |||| ||||| ||||||||||||||    
T  3965 acaattaaataacataaatgacttctggtgtaatttaac 4003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 337 - 423
Target Start/End: Original strand, 2277209 - 2277295
Alignment:
Q  337 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||| |||||||||||||    
T  2277209 caacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaa 2277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 27533069 - 27532989
Alignment:
Q  344 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  27533069 ttataattaaataacttaaaggacgtaagtggtacataaaaaacttaaaagatcaatttattacaattaaataacttaaaa 27532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 328 - 407
Target Start/End: Original strand, 37064689 - 37064768
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 407  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||    
T  37064689 ttaaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaaaaacttaattgattaatttattac 37064768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 340 - 442
Target Start/End: Complemental strand, 15907790 - 15907689
Alignment:
Q  340 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 439  Q
    ||||||||||||||||||||||||| |  ||||||||||| |||||||||||| || |||||| | |||| ||||||||||||| || || |||||||||    
T  15907790 cttgttataattaattaacttaaagaatataagtggtacgaaaaaaacttaaa-gaccaatttatcacaagtaaataacttaaaggatttctggtgtaat 15907692  T
Q  440 tta 442  Q
    |||    
T  15907691 tta 15907689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 328 - 442
Target Start/End: Original strand, 15907944 - 15908058
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||| |  ||||| |||||  |||||| |||||| ||     
T  15907944 ttaaaggatcaacttgttataattaattaacctaaaaaacctaagtggtatgaaaaaaacttaaataactaatttattacagttaaatatcttaaaggat 15908043  T
Q  428 ttatggtgtaattta 442  Q
    || ||||||||||||    
T  15908044 ttttggtgtaattta 15908058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 172 - 424
Target Start/End: Complemental strand, 2510263 - 2510015
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcc-cgaataacttgcagttttaagatctga 270  Q
    |||||||||||| | ||| |||||||  |||||||||| || |||||||||||||| ||||| |||  | || |||||||||| || |||||| || |||    
T  2510263 aacaagttagttctttaattattttttgtaacacttagctcctttaagttatttaagtgtaatttttagaccacgaataacttacatttttaaaatatga 2510164  T
Q  271 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggaccta 370  Q
    |||| ||||| || || || |||| || |||| |||| |||||| |||||       |||||||| ||| |||||  |||||||||||||    ||||||    
T  2510163 aatctctcaaattgttgcaattaagtaacttaaaggatctaatttgtacggaaaaacttaaaggaacaatttgttgcaattaattaactt----gaccta 2510068  T
Q  371 agtggtacgtaaaaaa-cttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    ||||||| | |||||| | ||||  | |||||| |||||| ||||||||||||||    
T  2510067 agtggtatgaaaaaaaacataaa--accaatttattacaattaaataacttaaaa 2510015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 360 - 442
Target Start/End: Original strand, 12807666 - 12807748
Alignment:
Q  360 taaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    |||||||||||||||||| |||||||| |||||  |||||||| | |||| ||||||||||||||||  | ||||||||||||    
T  12807666 taaaggacctaagtggtatgtaaaaaatttaaaaaatcaatttataacaattaaataacttaaaagatctctggtgtaattta 12807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 302
Target Start/End: Original strand, 3806871 - 3807000
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 271  Q
    ||||||||||| || |||||||||||| || |||||||||| ||| | |||||||||| ||| |||  | || || |||||| || ||||||||| ||||    
T  3806871 aacaagttagtcatttaagtatttttcgtagcacttaggtccttttaattatttaattataatttttagccctgagtaacttacatttttaagatatgaa 3806970  T
Q  272 atccctcaatttcttacagttaaatagctta 302  Q
    ||  ||||| || ||||||||||||| ||||    
T  3806971 atatctcaa-ttgttacagttaaataactta 3807000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  112 tatcacttacgtcatttaagttatttaattataacaagttagttat 157  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 427
Target Start/End: Original strand, 32566875 - 32566969
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    |||||| | ||||||| ||||||| |||||||| ||||||| | |||| |||||  | |||| ||||||||||||| ||  ||||||||||||||||    
T  32566875 aaggactagcttgttacaattaataaacttaaatgacctaaatagtacataaaa--cctaaaggatcaatttcttataataaaataacttaaaagac 32566969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 2967707 - 2967794
Alignment:
Q  337 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 425  Q
    ||||||||||||||||||||| |||||||| |||||| | | | ||||||||||||  | |||||| |||  | |||||||||||||||    
T  2967707 caacttgttataattaattaatttaaaggatctaagtagaaggaaaaaaacttaaa-aaacaatttgttaggattaaataacttaaaag 2967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 3806998 - 3807091
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||| || ||||||||| |||||||||||||||| ||| ||||| |||  ||||||||||| | || |||||| |||| | ||||||| |||||    
T  3806998 ttaaagtactaacttgttaaaattaattaacttaaaagacataagttgta--taaaaaacttagaggaccaatttgttactattaaataatttaaa 3807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 12190002 - 12189869
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc-tcaatttc 284  Q
    ||||||||||   ||||||||||||  ||||| |||||||||||||||||| ||  ||| |||| ||| |  ||| |||||||||||| || | |||||     
T  12190002 taagtattttctgtaacacttaggttctttaatttatttaattgtaacttttagacccctaatatcttacgttttcaagatctgaaattccgttaatttg 12189903  T
Q  285 ttacagttaaatagcttagaggacctaattggtac 319  Q
    | ||||||||||| |||| | ||||||||||||||    
T  12189902 t-acagttaaataacttaaatgacctaattggtac 12189869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 12434430 - 12434297
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc-tcaatttc 284  Q
    ||||||||||   ||||||||||||  ||||| |||||||||||||||||| ||  ||| |||| ||| |  ||| |||||||||||| || | |||||     
T  12434430 taagtattttctgtaacacttaggttctttaatttatttaattgtaacttttagacccctaatatcttacgttttcaagatctgaaattccgttaatttg 12434331  T
Q  285 ttacagttaaatagcttagaggacctaattggtac 319  Q
    | ||||||||||| |||| | ||||||||||||||    
T  12434330 t-acagttaaataacttaaatgacctaattggtac 12434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 45445141 - 45445210
Alignment:
Q  337 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 407  Q
    ||||||||||| ||||| ||| ||| ||||||||| ||||||| |||||||||||| || |||||| ||||    
T  45445141 caacttgttatgattaaataatttacaggacctaattggtacg-aaaaaacttaaacgaccaatttattac 45445210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 446
Target Start/End: Original strand, 41123 - 41216
Alignment:
Q  354 ttaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga-cttatggtgtaatttaacat 446  Q
    ||||||||||  || ||||||||||  |||||||||||| ||  ||||| |||||| ||||||| ||||| || ||  ||||||||||||||||    
T  41123 ttaacttaaataacataagtggtacacaaaaaacttaaaggactaatttgttacaattaaataatttaaaggatctcttggtgtaatttaacat 41216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 8453098 - 8453163
Alignment:
Q  173 acaagttagttatgtaagtatttttcataacacttaggt-cgtttaagttatttaattgtaacttt 237  Q
    |||||||||| || ||||||||| ||||||||||||  | | |||||||||||| |||||||||||    
T  8453098 acaagttagtcatttaagtatttctcataacacttacatccttttaagttatttgattgtaacttt 8453163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 32566769 - 32566724
Alignment:
Q  350 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatga 395  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  32566769 ttaaataacttaaaggacttaagtggcacgaaaaaaacttaaatga 32566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 3806932 - 3806856
Alignment:
Q  344 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactt 420  Q
    |||||||||| ||| | |||||||||||||| |||| |||| ||||||||||  || || |||||  ||||||||||    
T  3806932 ttataattaaataattaaaaggacctaagtgctacgaaaaatacttaaatgactaacttgttacagttaaataactt 3806856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 32566867 - 32566752
Alignment:
Q  193 tttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagt 291  Q
    ||||||||||||||||  || |||| |||||| ||||| ||| |||||||| ||||||||||  | ||||||||| ||||||| |  || || |||| ||    
T  32566867 tttttcataacacttacatcttttacgttattgaattgaaacttttaggtctcgaataacttata-ttttaagatttgaaatctcctaaattgttacggt 32566769  T
Q  292 taaatagcttagaggac 308  Q
    |||||| |||| |||||    
T  32566768 taaataacttaaaggac 32566752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 187 - 423
Target Start/End: Complemental strand, 363853 - 363615
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttc 284  Q
    |||||||||||| |||  |||| ||| |||||||| |||||||||||| |||||| || ||||||||| || ||||||||||| |||| |||  || ||     
T  363853 taagtatttttcgtaatgcttaagtcatttaagttgtttaattgtaacttttaggcccagaataacttacatttttaagatctaaaatacccaaaaattg 363754  T
Q  285 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 384  Q
    |||| |||||||| |||| | ||||||||| |||||       ||||| ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||    
T  363753 ttacggttaaataacttaaatgacctaattagtacgaaaaaacttaaa-gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaa 363655  T
Q  385 a-acttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    | |||||||  | | |||| |||||| |||||||||||||    
T  363654 agacttaaagaacctatttattacaattaaataacttaaa 363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 187 - 422
Target Start/End: Original strand, 47726457 - 47726693
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 285  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| || |    
T  47726457 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgt 47726556  T
Q  286 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 384  Q
    ||  || ||||| |  | |||||||  |||||||         ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||    
T  47726557 taaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaa 47726656  T
Q  385 aacttaaatgatcaatttcttacaactaaataacttaa 422  Q
    ||||||||| | |||||| ||||||  |||||||||||    
T  47726657 aacttaaat-accaatttattacaataaaataacttaa 47726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 187 - 422
Target Start/End: Original strand, 47747763 - 47747999
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 285  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| || |    
T  47747763 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgt 47747862  T
Q  286 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 384  Q
    ||  || ||||| |  | |||||||  |||||||         ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||    
T  47747863 taaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaa 47747962  T
Q  385 aacttaaatgatcaatttcttacaactaaataacttaa 422  Q
    ||||||||| | |||||| ||||||  |||||||||||    
T  47747963 aacttaaat-accaatttattacaataaaataacttaa 47747999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 16554396 - 16554303
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    |||||||||||||||| |||| ||||||||||| ||| ||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 29955000 - 29954870
Alignment:
Q  188 aagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttctt 286  Q
    ||||||||| | || |||||||||| ||||||||||||||||||||||||  ||||| ||||||||| || ||||||||| |||||| |  ||| || ||    
T  29955000 aagtattttccgtaccacttaggtc-tttaagttatttaattgtaacttttagtcccagaataacttacatttttaagatatgaaattctccaaattatt 29954902  T
Q  287 acagttaaatagcttagaggacctaattggta 318  Q
    || |||||||| |||| |||||||||||||||    
T  29954901 acggttaaataacttaaaggacctaattggta 29954870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 18470279 - 18470189
Alignment:
Q  334 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  18470279 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 18470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 802251 - 802346
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||||||||||||||| |||||||||| | ||||||  ||||||||||| |||||  ||||| || |||||| |||||  |||||||||||||    
T  802251 ttaaaggaccaacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaa 802346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 442
Target Start/End: Original strand, 12656368 - 12656474
Alignment:
Q  335 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 434  Q
    |||||||| ||| ||||||||||||||||||   ||||||||||| |||||| |||||  |||||| | |||||| ||||||||||||| |||||  |||    
T  12656368 accaacttattacaattaattaacttaaagggtttaagtggtacg-aaaaaatttaaaaaatcaatatgttacaattaaataacttaaaggactttcggt 12656466  T
Q  435 gtaattta 442  Q
    ||||||||    
T  12656467 gtaattta 12656474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 423
Target Start/End: Complemental strand, 16026194 - 16026108
Alignment:
Q  337 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||| ||| | |||| |||||||||||||||||| |||||| ||||||  |||||||| || || |||||| |||||||||||||    
T  16026194 caacttattacagttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaa 16026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 444
Target Start/End: Original strand, 11016877 - 11017075
Alignment:
Q  248 taacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn--ttaaaggaccaacttgtt 345  Q
    |||||| || ||||||||| | ||||| ||||| || |||| ||||||||| ||| ||||||||||||| |||         |||||| | |||||||||    
T  11016877 taacttacatttttaagattttaaatctctcaaattgttacggttaaatagtttaaaggacctaattggaacgaaaaacaacttaaag-atcaacttgtt 11016975  T
Q  346 ataattaattaacttaaaggacctaagtggtacgtaaaaaacttaa-atgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 444  Q
    | |||||| |||||||||  ||||||||| || | ||||||  ||| | ||| ||||| ||| || ||||||||||||| ||| ||| ||||||||||||    
T  11016976 acaattaaataacttaaaacacctaagtgatatgcaaaaaaaataagaagattaatttattataattaaataacttaaaggacatatagtgtaatttaac 11017075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 26706207 - 26706274
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 253  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||||| |||||| | ||||||||||    
T  26706207 taagtagttttcgtaacacttaggttctttaagttatttaattgtaacttttaggcctcgaataactt 26706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 46530258 - 46530163
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    ||||||| | ||||||||| |||||||||||||||| |||||||||||| || |||| | |||||  | || ||| | |||| |||||||||||||    
T  46530258 ttaaagggcaaacttgttacaattaattaacttaaaagacctaagtggtgcgaaaaagaattaaagaaccagtttgtgacaattaaataacttaaa 46530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 48130268 - 48130213
Alignment:
Q  335 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    |||||||||||| |||||||||||||||| || |||||||||||  ||||||||||||    
T  48130268 accaacttgttacaattaattaacttaaatgatctaagtggtac--aaaaaacttaaa 48130213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 429
Target Start/End: Original strand, 48130428 - 48130516
Alignment:
Q  340 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 429  Q
    ||||||| || ||||||||||||| ||||||| |||||   | ||||||||||| |||||||| |||||| ||||||| ||||| |||||    
T  48130428 cttgttacaagtaattaacttaaaagacctaaatggtaaa-agaaaacttaaataatcaatttattacaattaaataatttaaaggactt 48130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 442
Target Start/End: Original strand, 363806 - 363906
Alignment:
Q  343 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag-acttatggtgtaattt 441  Q
    |||| ||||||  |||||||| ||| ||||   |||| |||| ||||||||||  |||||||||||| ||||||||||||||| || | |||||||||||    
T  363806 gttacaattaaacaacttaaatgacttaagcattacgaaaaatacttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaattt 363905  T
Q  442 a 442  Q
    |    
T  363906 a 363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 407
Target Start/End: Original strand, 26706353 - 26706432
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaactt-aaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 407  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| ||| || |||| ||||||||||||  |||||||| ||||    
T  26706353 ttaaaggacaaacttgtaataattaattaacttaaaaggacttaaatgatacg-aaaaaacttaaagaatcaatttattac 26706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 442
Target Start/End: Original strand, 46530411 - 46530517
Alignment:
Q  340 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa---cttaaat-gatcaatttcttacaactaaataacttaaaagacttatggtg 435  Q
    ||||||| |||||||||||||||| ||| | ||||||||| ||||||   ||||||  || |||||| |||||| ||||||||| ||| ||| | |||||    
T  46530411 cttgttacaattaattaacttaaatgacgtgagtggtacgaaaaaaaaaacttaaaaagagcaatttgttacaaataaataactaaaatgacatctggtg 46530510  T
Q  436 taattta 442  Q
    |||||||    
T  46530511 taattta 46530517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 530
Target Start/End: Original strand, 2125101 - 2125168
Alignment:
Q  464 tttttgtatggttcttaactaaact-acaaaaatttctttaaatttataattttttcaaagtttgtta 530  Q
    |||| |||||||||||||||||| | || |  |||| ||||||||||||||||| |||||||||||||    
T  2125101 ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta 2125168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 18470430 - 18470384
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaa 233  Q
    |||||||||||||||  |||||| || ||||||||||||||||||||    
T  18470430 taagtatttttcatacaacttagatcctttaagttatttaattgtaa 18470384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 16026346 - 16026406
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    |||||||||||||||| |||||| ||||||||||  | ||||| ||||| ||||||||||||    
T  16026346 aaggaccaacttgttacaattaagtaacttaaagagcgtaagttgtacg-aaaaaacttaaa 16026406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 18470439 - 18470495
Alignment:
Q  335 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    |||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  18470439 accaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 18470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 320
Target Start/End: Original strand, 47600499 - 47600648
Alignment:
Q  172 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 270  Q
    ||||| ||||| || |||||||||||| |||  |||||||| ||  |||| |||||||||||| |||||| ||| ||| ||||  | |||||| ||||||    
T  47600499 aacaaattagtcatttaagtatttttcgtaatgcttaggtctttcgagttgtttaattgtaacttttaggacccaaattacttcaatttttaacatctga 47600598  T
Q  271 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 320  Q
    ||| || |||  | ||||  ||||||| |||| | |||| ||||||||||    
T  47600599 aataccacaaacttttacgattaaataacttaaatgaccaaattggtacg 47600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 444
Target Start/End: Original strand, 23808083 - 23808199
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 427  Q
    ||||| ||||||||| ||| |||||| ||||||||  ||||||| || || |  ||||||| ||| ||  ||||| |||||| |||| |||||||||||     
T  23808083 ttaaatgaccaacttattacaattaaataacttaatagacctaactgatatgagaaaaactaaaaagaataatttattacaattaaacaacttaaaagat 23808182  T
Q  428 ttatggtgtaatttaac 444  Q
     | || |||||||||||    
T  23808183 ctttgatgtaatttaac 23808199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 184 - 419
Target Start/End: Complemental strand, 30534666 - 30534432
Alignment:
Q  184 atgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatctgaaatccctcaatt 282  Q
    ||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||| |||| ||| |||||||| || ||||||||||| |||   ||||| |    
T  30534666 atgtaagtatttttcgtaagacttaggtcttttaaattatttaattgtaacttgtaggccccaaataacttacatttttaagatctaaaacatctcaaat 30534567  T
Q  283 tcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gta 381  Q
    | ||||||||||||| |||| | || ||| ||||||||        | || || |||||| ||| ||||||||||| |||| |||||||| |||||   |    
T  30534566 tgttacagttaaataactta-aagagctagttggtacggaaaaaacttaaagagcaactttttacaattaattaacataaa-gacctaagcggtacaaaa 30534469  T
Q  382 aaaaacttaaatgatcaatttcttacaactaaataact 419  Q
    ||||||||||| || |||||| |||||| |||||||||    
T  30534468 aaaaacttaaaagaccaattt-ttacaattaaataact 30534432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 187 - 423
Target Start/End: Original strand, 51265744 - 51265984
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 285  Q
    |||||||||||||||  |||||| || |||||||||||||||||||| ||| | | |  ||| |||||  | ||||||||||||||||| ||||| || |    
T  51265744 taagtatttttcatacaacttagatcctttaagttatttaattgtaaatttcaagccttgaaaaacttaaatttttaagatctgaaatctctcaaattgt 51265843  T
Q  286 tacagttaaatagcttagaggacctaattggtacgnnnnnnn---ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg-ta 381  Q
    ||| |||||||| |||| | ||| ||| || ||||          ||||  ||||||||||||||| |||| |||||||||||| ||||| ||||||  |    
T  51265844 tacggttaaataacttaaaagac-taagtgatacgggaaaaaaacttaacagaccaacttgttatagttaaataacttaaaggatctaagaggtacgaaa 51265942  T
Q  382 aaaaacttaaatgatcaatttcttacaactaaataacttaaa 423  Q
    |||||| ||||||||||| || |||||| |||||||||||||    
T  51265943 aaaaacgtaaatgatcaacttattacaattaaataacttaaa 51265984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 235 - 392
Target Start/End: Complemental strand, 44291182 - 44291025
Alignment:
Q  235 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaag 333  Q
    ||||||||||||||||||| || ||||||||||| |||||||  || || |||| |||||||| |||| || ||||  ||||||||        |||||     
T  44291182 tttaggtcccgaataacttacatttttaagatctaaaatccccaaaattgttacggttaaataacttaaag-accttgttggtacggaaaaaacttaaaa 44291084  T
Q  334 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    | ||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||||    
T  44291083 ggccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaacttaaa 44291025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 44291413 - 44291509
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 424  Q
    ||||||||| ||||||||| |||||| ||||||||||||| |||||| |||  |||||| ||| | || |||||| |||||| ||||||||||||||    
T  44291413 ttaaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 338 - 442
Target Start/End: Original strand, 48200367 - 48200471
Alignment:
Q  338 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 437  Q
    ||||| ||| ||| |||||| ||||| ||| |||| |||||| |||||| ||||||||||||||  |||||| ||||||| |||||||| || | |||||    
T  48200367 aacttattacaatcaattaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttacaattaaataagttaaaagatttctagtgta 48200466  T
Q  438 attta 442  Q
    |||||    
T  48200467 attta 48200471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 442
Target Start/End: Original strand, 33291582 - 33291676
Alignment:
Q  348 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    |||||||||||||||| ||| |||||||||   |||||  |||||  |  ||||| |||||| ||||||||||||| |||||||| |||||||||    
T  33291582 aattaattaacttaaatgacataagtggtataaaaaaagtttaaagtactaatttgttacaattaaataacttaaaggacttatgttgtaattta 33291676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 51265739 - 51265679
Alignment:
Q  331 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 392  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  51265739 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 51265679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  111 gtatcacttacgtcatttaagttatttaattataacaagttagt 154  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 50898882 - 50898948
Alignment:
Q  187 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 253  Q
    |||||||||||| ||||||||||||  |||||||| |||||||||||| |||| ||| ||||||||||    
T  50898882 taagtatttttcgtaacacttaggt-atttaagttgtttaattgtaacttttacgtctcgaataactt 50898948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 442
Target Start/End: Original strand, 1662257 - 1662357
Alignment:
Q  341 ttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 440  Q
    |||||| ||||||||||| ||| ||| ||||||||||   |||||||||||| ||||||||| || ||| ||||||  ||||| ||| | || |||||||    
T  1662257 ttgttacaattaattaacataatggatctaagtggtata-aaaaaacttaaaagatcaatttattgcaattaaatactttaaaggacctctgatgtaatt 1662355  T
Q  441 ta 442  Q
    ||    
T  1662356 ta 1662357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 9343215 - 9343251
Alignment:
Q  328 ttaaaggaccaacttgttataattaattaacttaaag 364  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  9343215 ttaaaggaccaacttattataattaaataacttaaag 9343251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 350 - 442
Target Start/End: Original strand, 14747077 - 14747167
Alignment:
Q  350 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 442  Q
    |||| |||| |||| |||||||||||||   ||||||||||||  ||||| || |||||| ||||||| ||||||||||| | ||||||||||    
T  14747077 ttaaataacataaatgacctaagtggtaaa-aaaaaacttaaaa-atcaaattgttacaattaaataaattaaaagactttttgtgtaattta 14747167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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