View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15602_high_11 (Length: 405)
Name: NF15602_high_11
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 30 - 384
Target Start/End: Complemental strand, 3215311 - 3214958
Alignment:
| Q |
30 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3215311 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac-ttcgtgttgaattgcgtgctacct |
3215213 |
T |
|
| Q |
130 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
229 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215212 |
cgtttgataatcgtacggtgcaagagtatctcattcatactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
3215113 |
T |
|
| Q |
230 |
agatgttattttggaaggtttaccacatggatatagtccggttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
329 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215112 |
agatgttattttggaaggtttaccacatggttatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
3215013 |
T |
|
| Q |
330 |
ctaattgctcatgaaacacgtcttgacaagttcaagaagaaaactcttgatgatg |
384 |
Q |
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| T |
3215012 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatgatg |
3214958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 32460826 - 32460471
Alignment:
| Q |
30 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
129 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||| || | ||||||||| |||| |||| | |
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| T |
32460826 |
cttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaaggcaaggcagt-tacgtgttgaactgcgttctactt |
32460728 |
T |
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| Q |
130 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgctt-caattgatgatccaattcctgtcaatcagcact |
228 |
Q |
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| ||||||||||||||||||| ||| |||| |||| | ||||||| | || || |||||||||| | |||| ||||||| |||| | | |||||| | |
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| T |
32460727 |
ctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgctttccattggtgatccagttcccattactcagcatt |
32460628 |
T |
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| Q |
229 |
tagatgttattttggaaggtttaccacatggatatagtccggttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctct |
328 |
Q |
| |
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||||||| ||||| |||||||||||||| | |||||||| || || || |||||||| || || ||||| |||||| || |||||||| || ||||| |
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| T |
32460627 |
tagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaaatttgacactattgatattgatgaggtagagtctct |
32460528 |
T |
|
| Q |
329 |
gctaattgctcatgaaacacgtcttgacaagttcaagaagaaaactcttgatgatgt |
385 |
Q |
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| ||||||||||||| || ||||||||||||||||||||||| ||| |||||||||| |
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| T |
32460527 |
gttaattgctcatgagactcgtcttgacaagttcaagaagaagactattgatgatgt |
32460471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 367
Target Start/End: Complemental strand, 36399779 - 36399448
Alignment:
| Q |
35 |
catgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacctcgttt |
134 |
Q |
| |
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||||||||| |||| | | | ||||||||| | |||||||| || ||||||| ||| ||||| | |||| || |||||||| |||| |||| || || |
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| T |
36399779 |
catgcgtatgaactttgggataaacttgtggcatattttcacaaacagatgcgtgcgaaggcgcgtcaac-ttagtgttgaactgcgttctacttctctt |
36399681 |
T |
|
| Q |
135 |
gataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcacttagatg |
234 |
Q |
| |
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| |||| ||||||||| || ||||| |||||| ||| ||||| | || ||||| || || || | |||||| ||||||| ||||| || || |||| |
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| T |
36399680 |
gcaaatcttacggtacaggattatcttcttcgtattcgtgatcttgttgataatctagcctctataggagatccagttcctgttaatcaacatttggatg |
36399581 |
T |
|
| Q |
235 |
ttattttggaaggtttaccacatggatatagtccggttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgctaat |
334 |
Q |
| |
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| ||||| ||||||||||| || | | |||||| ||||| ||||| || || || || ||||||||||||||| | || || ||||| ||||| || | |
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| T |
36399580 |
tgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgttattgacgttgacgaagttgagtctcttcttct |
36399481 |
T |
|
| Q |
335 |
tgctcatgaaacacgtcttgacaagttcaagaa |
367 |
Q |
| |
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||||||||||||||||||||| || |||||||| |
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| T |
36399480 |
tgctcatgaaacacgtcttgataaattcaagaa |
36399448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 52665923 - 52665850
Alignment:
| Q |
294 |
tttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaacacgtcttgacaagttcaagaa |
367 |
Q |
| |
|
||||||||||||||||| || || ||||| ||||| || |||||||||||||||||||||| || |||||||| |
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| T |
52665923 |
tttgatgttattgacattgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
52665850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 367
Target Start/End: Complemental strand, 24789452 - 24789296
Alignment:
| Q |
211 |
ttcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccggttatctctgttgttgagagtaagtttgatgttattgacat |
310 |
Q |
| |
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||||||| ||||| || || ||||| ||||| |||||||||||||| | | |||||| |||| | ||| || || || || ||||||||||||||| | |
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| T |
24789452 |
ttcctgttaatcaacatttggatgtgattttagaaggtttaccacaagattttagtcctattatatttgtagtggaaagcaaatttgatgttattgacgt |
24789353 |
T |
|
| Q |
311 |
agatgaggttgaatctctgctaattgctcatgaaacacgtcttgacaagttcaagaa |
367 |
Q |
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|| || ||||| ||||| || || ||||||||||||||||||| || |||||||| |
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| T |
24789352 |
tgacgaagttgagtctcttcttcttactcatgaaacacgtcttgataaattcaagaa |
24789296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 358
Target Start/End: Complemental strand, 44143567 - 44143344
Alignment:
| Q |
138 |
aatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcacttagatgtta |
237 |
Q |
| |
|
||||||| ||||| ||| |||||| ||| | ||||||||||| || ||| | |||||||||| ||||||| | ||| ||||| || ||||||||| |
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| T |
44143567 |
aatcgtatggtactagaatatctccttctaatgcgcaatcttattgataatttggcttcaattggtgatccagtccctagtaatcaacatctagatgtta |
44143468 |
T |
|
| Q |
238 |
ttttggaaggtttaccacatggatatagtc---cggttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgctaat |
334 |
Q |
| |
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|| | |||||||||||||| || |||| | | ||| |||||| |||| ||||| ||||| ||||||||| ||||||||||||| || || || |
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| T |
44143467 |
ttctagaaggtttaccacagaaattcagtcgtgctgctatttctgttcttgaaagtaaatttgagactattgacatttatgaggttgaatccctccttat |
44143368 |
T |
|
| Q |
335 |
tgctcatgaaacacgtcttgacaa |
358 |
Q |
| |
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||||||||| |||| ||||||||| |
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| T |
44143367 |
tgctcatgagacacttcttgacaa |
44143344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 372
Target Start/End: Complemental strand, 16443663 - 16443594
Alignment:
| Q |
303 |
attgacatagatgaggttgaatctctgctaattgctcatgaaacacgtcttgacaagttcaagaagaaaa |
372 |
Q |
| |
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||||| || ||||| ||||||||| || | ||| |||| || ||||||||||||||||| |||||||||| |
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| T |
16443663 |
attgatattgatgaagttgaatctttgttgatttctcacgagacacgtcttgacaagtttaagaagaaaa |
16443594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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