View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15602_high_14 (Length: 385)
Name: NF15602_high_14
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 17983531 - 17983167
Alignment:
| Q |
1 |
catcaacctcctcagcttcatctatatcttcatctttataatgataataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgata |
100 |
Q |
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| T |
17983531 |
catcaacctcctcagcttcatctatatcttcatctttataatgataataatcacgaccatcaaaggtaaaaatattatttggatccaccaattctcgata |
17983432 |
T |
|
| Q |
101 |
atcagaatgcatttcttcaatgtcgtaaattccgtttggaattaatctcnnnnnnngtgaaagatttgagattaacctactatcattgttgtcgtcgtca |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||| |||||||| |||||||||| |
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| T |
17983431 |
atcagcatgcatttcttcaatgtcgtaaattccgtttggaattaatctctttttttgtaaaatatttgtgattaacctacgatcattgtcgtcgtcgtca |
17983332 |
T |
|
| Q |
201 |
tcatcgccatcatctggctcatcgatgtccccgtcatcctcatactcgtcatggctgtcgttatcatcatcagtgttgccatcaccagcgttgtcttcaa |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17983331 |
tcatcgccatcatctggctcattgatgtccccgtcatcctcgtactcgtcatggctgtcgttgtcatcatcagtgttgccatcaccagcgttgtcttcaa |
17983232 |
T |
|
| Q |
301 |
cataaacaacattattcatattaatctcatagtcatcccaagcttcatcatcttcatgatgatgt |
365 |
Q |
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| T |
17983231 |
cataaacaacattattcatgttaatctcatagtcatcccaattttcaccatcttcatgatgatgt |
17983167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 17975891 - 17975528
Alignment:
| Q |
1 |
catcaacctcctcagcttcatctatatcttcatctttataatgataataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | |||||| |||||| |||||||||||||||||| || |||| |||||||||||||||||| |
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| T |
17975891 |
catcaacctcctcagcttcatctatagcttcatcttgaacatgatagtaatcacgaccatcaaaggtaaaaatgtcgtttgaatccaccaattctcgata |
17975792 |
T |
|
| Q |
101 |
atcagaatgcatttcttcaatgtcgtaaattccgtttggaattaatctcnnnnnnngtgaaagatttgagattaacctactatcattgttgtcgtcgtca |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||| |||||||| |||||||||| |
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| T |
17975791 |
atcagcatgcatttcttcaatgtcgtaaattccgtttggaattaatctctttttttgtaaaatatttgagattaatttacaatcattgtcgtcgtcgtca |
17975692 |
T |
|
| Q |
201 |
tcatcgccatcatctggctcatcgatgtccccgtcatcctcatactcgtcatggctgtcgttatcatcatcagtgttgccatcaccagcgttgtcttcaa |
300 |
Q |
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|
||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
17975691 |
tcatcgccatcatctaactcattgatgtccccgtcatcctcgtactcgacatggctgtcgttgtcatcatcagtgttgccatcaccagcgtagtcttcaa |
17975592 |
T |
|
| Q |
301 |
cataaacaacattattcatattaatctcatagtcatcccaagcttcatcatcttcatgatgatg |
364 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17975591 |
cataaacaacattattcatgttaatctcatagtcatcccaagcttcatcatcttcatgatgatg |
17975528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 17986826 - 17986787
Alignment:
| Q |
26 |
atcttcatctttataatgataataatcatgaccatcaaag |
65 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
17986826 |
atcttcatctttaacatgataataatcatgaccatcaaag |
17986787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 13148547 - 13148475
Alignment:
| Q |
41 |
atgataataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgataatcagaatgcatt |
113 |
Q |
| |
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|||||||||||||||| ||||| | |||||| ||| || || |||||| |||| |||||||||| ||||||| |
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| T |
13148547 |
atgataataatcatgatcatcatggctaaaaatgttgttagggtccacccattcacgataatcagcatgcatt |
13148475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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