View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15602_high_17 (Length: 381)
Name: NF15602_high_17
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 64 - 362
Target Start/End: Original strand, 31541576 - 31541866
Alignment:
| Q |
64 |
ggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnnnnnnnngatgatcttaaattaattattaacga |
163 |
Q |
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| T |
31541576 |
ggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa---------gatgatcttaaattaattattaacga |
31541666 |
T |
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| Q |
164 |
ggttgaaccc-ttttcgagctactgttcccattagcactattgttaacacttaacagagtttaccatcaactattataggctgtaaagagagagcaacaa |
262 |
Q |
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| T |
31541667 |
ggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatcaactattataggctgtaaagagagaacaacaa |
31541766 |
T |
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| Q |
263 |
tataatgcgatcaaagatcacttaatttgattacttttcccagcaaatttttcatgaaaaatctaagagnnnnnnnccatcattcacacgtgatgatgtc |
362 |
Q |
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| T |
31541767 |
tataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaagagagaaaaaccatcattcacacgtgttgatgtc |
31541866 |
T |
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