View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15602_high_18 (Length: 380)
Name: NF15602_high_18
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 48730011 - 48730382
Alignment:
| Q |
1 |
atacaacctggacaaacagacaggaattttactacaagatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctatccctttgactc |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48730011 |
atacaacctggacaaacaaacaggaattttactacaagatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctctccctttgactc |
48730110 |
T |
|
| Q |
101 |
ggacaagatctttattaatatctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagttt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730111 |
ggacaaggtctttattaatatctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagttt |
48730210 |
T |
|
| Q |
201 |
ccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaa |
300 |
Q |
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| T |
48730211 |
ccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaa |
48730310 |
T |
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| Q |
301 |
ttatagcgttctaagatgtaaggatccatttgaatcagtttgtatagcaagtctatatctcccatctgtgct |
372 |
Q |
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| T |
48730311 |
ttatagcgttctaagatgtaaggatcgatttgaatcagtttgaatagcaagtctatatctcccatttgtgct |
48730382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 301
Target Start/End: Complemental strand, 4819091 - 4818941
Alignment:
| Q |
151 |
ttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtat |
250 |
Q |
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| T |
4819091 |
ttgttttgcatagcaagatggataggactgaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcggaggcaaattggagat |
4818992 |
T |
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| Q |
251 |
gtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
301 |
Q |
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| || || ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4818991 |
gacccatagatgcagcaatatgcaaaggagtttcaacaaatggtattaaat |
4818941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 31040743 - 31040851
Alignment:
| Q |
193 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatg |
292 |
Q |
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||||| ||||| |||||||||||||| | ||||||||| ||||||||||| |||||| || |||||| ||||||| |||||| |||||||||| |
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| T |
31040743 |
tttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaatg |
31040842 |
T |
|
| Q |
293 |
gtattaaat |
301 |
Q |
| |
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| ||||||| |
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| T |
31040843 |
gaattaaat |
31040851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 31075952 - 31076001
Alignment:
| Q |
193 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
242 |
Q |
| |
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||||| ||| |||||||||||||||| | ||||||||| ||||||||||| |
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| T |
31075952 |
tttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaa |
31076001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 28865196 - 28865156
Alignment:
| Q |
261 |
tgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
301 |
Q |
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| T |
28865196 |
tgcagcgatatgtaaaggagtttcaacaaatggtattaaat |
28865156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 30648044 - 30648008
Alignment:
| Q |
261 |
tgcagcaatatgcaaaggagtatcaacaaatggtatt |
297 |
Q |
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|||||||||||| |||||||| ||||||||||||||| |
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| T |
30648044 |
tgcagcaatatgtaaaggagtttcaacaaatggtatt |
30648008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 26087519 - 26087599
Alignment:
| Q |
162 |
agcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
242 |
Q |
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||||||||| |||||||||| ||| | || ||||||||||||||| |||||||||| | ||||||| ||||||||||| |
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| T |
26087519 |
agcaagatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaa |
26087599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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