View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15602_high_20 (Length: 368)
Name: NF15602_high_20
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 359
Target Start/End: Complemental strand, 38729855 - 38729529
Alignment:
| Q |
29 |
acattgatcattgagtcacatgcaaaatcagggaagcttgatattgatatgtctgcattttcagatatatatggagaaagctggatttctaccaactcca |
128 |
Q |
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| T |
38729855 |
acattgatcattgagtcacatgcaaaatcagggaagcttgatattgctatgtctgcattttcagatat----ggagaaagctggatttctaccaactcca |
38729760 |
T |
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| Q |
129 |
tctacgtatgcttgtctcttggaaatgcatgctgcgtctggacaaattgatcatgccatcaaactgtacaattcaatgactaatgcaggtttaaggccag |
228 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
38729759 |
tctacatatgcttgtctcttggaaatgcatgctgcgtctggacaaatcgatcatgctatgaaactgtacaattcaatgactaatgcaggtttaaggccag |
38729660 |
T |
|
| Q |
229 |
gcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagaccatgggatattc |
328 |
Q |
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|||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38729659 |
gcctgagcacttatactgttcttttatctctacttgctaataagaagctggtggatgttgctgccaaagttctacttgaaatgaagacaatgggatattc |
38729560 |
T |
|
| Q |
329 |
tgtggatgtgacagctagtgatgttttgatg |
359 |
Q |
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| T |
38729559 |
tgtggatgtgacagctagtgatgttttgatg |
38729529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 359
Target Start/End: Original strand, 385687 - 386013
Alignment:
| Q |
29 |
acattgatcattgagtcacatgcaaaatcagggaagcttgatattgatatgtctgcattttcagatatatatggagaaagctggatttctaccaactcca |
128 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| ||||| | |
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| T |
385687 |
acattgatcatcgagtctcatgcaaaatcagggaagcttgatattgctatgtctgcattttcagacat----ggagaaagctggatttctactaactcta |
385782 |
T |
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| Q |
129 |
tctacgtatgcttgtctcttggaaatgcatgctgcgtctggacaaattgatcatgccatcaaactgtacaattcaatgactaatgcaggtttaaggccag |
228 |
Q |
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||||| || |||||||| ||||||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
385783 |
tctacatacgcttgtctattggaaatgcatgcttcatccggacaaattgatcatgccatgaaactgtacaattcaatgactaatgcaggtttaaggccag |
385882 |
T |
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| Q |
229 |
gcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagaccatgggatattc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
385883 |
gcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagacgatgggatattc |
385982 |
T |
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| Q |
329 |
tgtggatgtgacagctagtgatgttttgatg |
359 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
385983 |
tgtggatgtgacagctagtgatgttttgatg |
386013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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