View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15602_high_21 (Length: 350)
Name: NF15602_high_21
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_21 |
 | |
|
| [»] chr5 (10 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 350
Target Start/End: Complemental strand, 13447396 - 13447067
Alignment:
| Q |
21 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447396 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
13447297 |
T |
|
| Q |
121 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgtttttgtgaaaattgtgccgacgatattgaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
13447296 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgaga |
13447197 |
T |
|
| Q |
221 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447196 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
13447097 |
T |
|
| Q |
321 |
tgtgattcgcattcctgatagcttacctct |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13447096 |
tgtgattcgcattcctgatagcttacctct |
13447067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 33 - 350
Target Start/End: Complemental strand, 13419833 - 13419516
Alignment:
| Q |
33 |
aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagta |
132 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| |||||| | || |||||||| ||||| |||||| ||||| ||||||| ||||| |||||||||||| |
|
|
| T |
13419833 |
aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta |
13419734 |
T |
|
| Q |
133 |
aaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgtttttgtgaaaattgtgccgacgatattgagaattactgcacca |
232 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| | | |
|
|
| T |
13419733 |
gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa |
13419634 |
T |
|
| Q |
233 |
aatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcat |
332 |
Q |
| |
|
|| ||| |||| || |||| ||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13419633 |
catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat |
13419534 |
T |
|
| Q |
333 |
tcctgatagcttacctct |
350 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13419533 |
tcctgatagcttacctct |
13419516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 88 - 350
Target Start/End: Complemental strand, 13426669 - 13426407
Alignment:
| Q |
88 |
aggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtc |
187 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13426669 |
aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc |
13426570 |
T |
|
| Q |
188 |
gtttttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactatcacctatggagg |
287 |
Q |
| |
|
||| || ||||||||||| || ||| |||||||||||||| || || | || |||| || ||||| ||||| ||||| |||| |||||||| |
|
|
| T |
13426569 |
gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg |
13426470 |
T |
|
| Q |
288 |
tttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctct |
350 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13426469 |
ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctct |
13426407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 338
Target Start/End: Complemental strand, 13413445 - 13413183
Alignment:
| Q |
76 |
tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatgg |
175 |
Q |
| |
|
||||||||||| ||||| || ||| ||||| |||||||||| || ||||||||||| | |||||||||||||||||||||||||| || || ||| || |
|
|
| T |
13413445 |
tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga |
13413346 |
T |
|
| Q |
176 |
ttgattcatgtcgtttttgtgaaaattgtgccgacgatattgagaattactgcaccaaatatactcaaacattcaatggtaagtctcgtggtggcactat |
275 |
Q |
| |
|
||||||||||||| | || || ||||| ||| || |||||||||||||| |||||| | |||| || |||| ||||| ||| || | |
|
|
| T |
13413345 |
ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt |
13413246 |
T |
|
| Q |
276 |
cacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctga |
338 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13413245 |
cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctga |
13413183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 13388988 - 13389108
Alignment:
| Q |
107 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgtttttgtgaaaattgtgc |
206 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || |||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
13388988 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt |
13389087 |
T |
|
| Q |
207 |
cgacgatattgagaattactg |
227 |
Q |
| |
|
||| || |||| |||||||| |
|
|
| T |
13389088 |
tgacaatcttgaaaattactg |
13389108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 13385167 - 13385288
Alignment:
| Q |
107 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgtttttgtgaaaattgtgc |
206 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || ||||||||||||||||| || || ||||| ||||||||||||| | ||| ||||||||| |
|
|
| T |
13385167 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt |
13385266 |
T |
|
| Q |
207 |
cgacgatattgagaattactgc |
228 |
Q |
| |
|
||| || |||| ||||||||| |
|
|
| T |
13385267 |
tgacaatcttgaaaattactgc |
13385288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 13454263 - 13454183
Alignment:
| Q |
107 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtc |
187 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||||||| |||| |
|
|
| T |
13454263 |
tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtc |
13454183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 13454089 - 13454035
Alignment:
| Q |
281 |
atggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
335 |
Q |
| |
|
||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
13454089 |
atggaggcttctctgactcaatggtttccgacgagcactttgtgtttcgcattcc |
13454035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 13393562 - 13393635
Alignment:
| Q |
274 |
atcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacc |
347 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||| ||||||||| | ||| |||||||||| ||||||| |
|
|
| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttacc |
13393635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 13393403 - 13393477
Alignment:
| Q |
115 |
gaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgt |
189 |
Q |
| |
|
||||| |||||||||||| | ||||| ||| ||||||||||||| || ||||||| | | |||||||| |||||| |
|
|
| T |
13393403 |
gaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgt |
13393477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 47601427 - 47601353
Alignment:
| Q |
261 |
tcgtggtggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcc |
335 |
Q |
| |
|
||||| |||||| | ||| || ||||||| ||| ||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
47601427 |
tcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcc |
47601353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 47601570 - 47601530
Alignment:
| Q |
118 |
gtgggaagcaaagtaaaaaagtttaaagttggagacaaagt |
158 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
47601570 |
gtgggaagcaaagtagaaaagttcaaagttggagacaaagt |
47601530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University