View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15602_high_26 (Length: 339)
Name: NF15602_high_26
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 39076154 - 39076443
Alignment:
| Q |
21 |
acatcatcaccatcattttcaatttcatcatttatctaagaccaattgcagccgcagnnnnnnnnnnnnnnnnnnngcatttatgaaaaagtaaaacaag |
120 |
Q |
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| T |
39076154 |
acatcatcaccatcattttcaatttcatcatttatctaagaccaattgcagccgcagttttttttt----------gcatttatgaaaaagtaaaacaag |
39076243 |
T |
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| Q |
121 |
tgcaggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattgcttaactatataagtctt |
220 |
Q |
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| T |
39076244 |
tgcaggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattgcttaactatataagtctt |
39076343 |
T |
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| Q |
221 |
cattcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaatacaaattagtgcaagtaaatgtttagacaatgcaatgatgatgtc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076344 |
cattcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaaaacaaattagtgcaagtaaatgtttagacaatgcaatgatgatgtc |
39076443 |
T |
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