View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15602_high_27 (Length: 339)

Name: NF15602_high_27

Description: NF15602

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15602_high_27

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 134; E-Value: 1e-69

Query Start/End: Original strand, 111 - 339

Target Start/End: Original strand, 35475571 - 35475803

Alignment:

Q	111	aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacannnnnnnnnaatgcgataccaacttattatccctctcnnnnnnn	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35475571	aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacatttttttttaatacgataccaacttattatccctctcaaaaaaa	35475670	T

Q	211	nnnnnn----gaaacttattatcttcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactgctgctttatttgtccccct	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35475671	aaaaacaaaagaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactactgctttatttgtccccct	35475770	T

Q	307	cacgttcccatatttgaactcaaaatggttgtg	339	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	35475771	cacgttcccatatttgaactcacaatggttgtg	35475803	T

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Target: chr5; HSP #2

Raw Score: 41; E-Value: 0.00000000000003

Query Start/End: Original strand, 28 - 124

Target Start/End: Original strand, 35474991 - 35475084

Alignment:

Q	28	catgcacatgttagatgaatttgtggtgtatgcaaaatg--nnnnnnnnnacaggttagattagattagattatataccactctcaagtcaataatctt	124	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35474991	catgcacatgttagatgaatttgtggtgtatgcaaaatgtttttttttttacagg-----ttagattagattatataccactctcaagtcaataatctt	35475084	T

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