View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15602_high_3 (Length: 497)
Name: NF15602_high_3
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_3 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 38 - 480
Target Start/End: Complemental strand, 34769353 - 34768911
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34769353 |
accaaaacatcactgattctcaactctcaaggtttcaatcagtttacccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
34769254 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34769253 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
34769154 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34769153 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
34769054 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34769053 |
tatttactattttgggagtttttgctaaaattattcaaatttatgtgtataattgaatttatataacatatatgttgttaattactaattatgttttaat |
34768954 |
T |
|
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
34768953 |
tttattttatggttcaatctcaacattgtatgtctaatgatgt |
34768911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 38 - 480
Target Start/End: Complemental strand, 23510632 - 23510191
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23510632 |
accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggttagtaaataaactctctttcattaatt |
23510533 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23510532 |
tgaatgttgaaatttctaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttccc-tttccaaaacaa |
23510434 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23510433 |
cattgtttgttgaacgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttctgca |
23510334 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23510333 |
tatttactgttttcggagtttttgttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgttgctaattactaattatgttttaat |
23510234 |
T |
|
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
23510233 |
tttattttatggttcaatctcaacattgtatgtctaatgatgt |
23510191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 55 - 480
Target Start/End: Complemental strand, 35780311 - 35779886
Alignment:
| Q |
55 |
tctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgct |
154 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35780311 |
tctcacctctcaaggtttcaatcggtttttccctttccaaaacaacactgtttggtaagtaaataaactctctttcattagtttgaatgttgaaattgct |
35780212 |
T |
|
| Q |
155 |
aaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaacactgtttattgaatgt |
254 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| |
|
|
| T |
35780211 |
aaaatagagattgatagagatttgttgaatgttgaaaacaacactgttttaaatttcaatcgattttcccctttccaaaacaacactgtttgttgaatgt |
35780112 |
T |
|
| Q |
255 |
tgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagcatatttactgttttggga |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | | || | |||||||||||||||||||||| |||||||||| |||||||||||||||| ||| |
|
|
| T |
35780111 |
tgaaattgctaaaatagagattgataaagattaaaaaaaatatagttgattattaacagaattagttttaattgatttatgcatatttactgttttagga |
35780012 |
T |
|
| Q |
355 |
gtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatg-ttgctaattactaattatgttttaattttattttctggttca |
453 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35780011 |
g-ttttgttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgtttgataattactaattatgttttaattttattttatggttca |
35779913 |
T |
|
| Q |
454 |
atctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
35779912 |
atctcaacattgtatgtctaatgatgt |
35779886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 38 - 455
Target Start/End: Original strand, 47128249 - 47128659
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47128249 |
accaaatcatcagtgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt |
47128347 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47128348 |
tgaatgttgaaattgtgaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaacaa |
47128447 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
47128448 |
cactgtttgttgaatgttgaaattgctaaaatag----------agattgatagagatttggttgattattaacagaagtagtaataattgatttctgca |
47128537 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttata----taacatatatgttgctaattactaattatgttt |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
47128538 |
tatttactgttttgggagtttttgttaaaattattcaaatttcagtgtataattgaatttatatatgtatcatatatgttgctaattactaattatgttt |
47128637 |
T |
|
| Q |
434 |
taattttattttctggttcaat |
455 |
Q |
| |
|
| |||||||||| ||||||||| |
|
|
| T |
47128638 |
ttattttattttatggttcaat |
47128659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 68 - 480
Target Start/End: Original strand, 54779731 - 54780123
Alignment:
| Q |
68 |
ggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattg |
167 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54779731 |
ggtttcaatcagttttcccctttccataacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattg |
54779830 |
T |
|
| Q |
168 |
atagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaacactgtttattgaatgttgaaattgctaaa |
267 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54779831 |
atagagatttgttgaatgttgaaaacaacattgtttcaaatttcaatcggttttcccctttccaaaacaacactgtttgttgaatgttgaaattgctaaa |
54779930 |
T |
|
| Q |
268 |
atagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagcatatttactgttttgggagtttttgttaaaa |
367 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54779931 |
atag--------------------agatttggttgattatcaacagaaatagtaataattgatttctgcatatttactgttttgggagtttttgttaaaa |
54780010 |
T |
|
| Q |
368 |
ttattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaattttattttctggttcaatctcaacattgta |
467 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54780011 |
ttattcaaatttcagtgtataattgaatttatatatcatatatgttgctaattactaattatattttaattttattttatggttcaatctcaacattgta |
54780110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 38 - 251
Target Start/End: Complemental strand, 9579271 - 9579058
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9579271 |
accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
9579172 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9579171 |
tgaatgttgaaattactaaaatagagattgatagagatttgttgaatgttgaaaacaacactatttcaaatttcaatcggttttcccatttccaaaacaa |
9579072 |
T |
|
| Q |
238 |
cactgtttattgaa |
251 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
9579071 |
cactgtttgttgaa |
9579058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 38 - 251
Target Start/End: Complemental strand, 9584966 - 9584753
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9584966 |
accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
9584867 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9584866 |
tgaatgttgaaattactaaaatagagattgatagagatttgttgaatgttgaaaacaacactatttcaaatttcaatcggttttcccatttccaaaacaa |
9584767 |
T |
|
| Q |
238 |
cactgtttattgaa |
251 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
9584766 |
cactgtttgttgaa |
9584753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 38 - 251
Target Start/End: Original strand, 48208712 - 48208925
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48208712 |
accaaatcatcgctgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
48208811 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48208812 |
tgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactatttcaaatttcaatcggttttcccctttccaaaacaa |
48208911 |
T |
|
| Q |
238 |
cactgtttattgaa |
251 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
48208912 |
cactgtttgttgaa |
48208925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 38 - 251
Target Start/End: Original strand, 10978369 - 10978582
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10978369 |
accaaatcatcactgattctcaactctcaaggtttcaatcagtttccccctttccaaagcaacactgtttggtaagtaaataaactctctttcattaatt |
10978468 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10978469 |
tgaatgttgaaattgctaaaatagagattgatagagattttttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaacaa |
10978568 |
T |
|
| Q |
238 |
cactgtttattgaa |
251 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
10978569 |
cactgtttgttgaa |
10978582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 317 - 477
Target Start/End: Complemental strand, 10431128 - 10430968
Alignment:
| Q |
317 |
tagtaataattgatttcagcatatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgct |
416 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10431128 |
tagtaataattgatttatgcatatttactgttttgggagtttttgttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgttgct |
10431029 |
T |
|
| Q |
417 |
aattactaattatgttttaattttattttctggttcaatctcaacattgtatgtctgatga |
477 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
10431028 |
aattactaattatgttttaattttattttatggttcaatctcaacattgtatgtctaatga |
10430968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 359 - 480
Target Start/End: Complemental strand, 2975757 - 2975636
Alignment:
| Q |
359 |
ttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaattttattttctggttcaatctc |
458 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
2975757 |
ttgttaaaattattcaaatttaagtgtataattgaatttatatatcatatatgttgctaattactaattatgctttaattttattttatggttcaacctc |
2975658 |
T |
|
| Q |
459 |
aacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| ||||| ||||||| |
|
|
| T |
2975657 |
aacattgtttgtctaatgatgt |
2975636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 10431223 - 10431126
Alignment:
| Q |
74 |
aatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgatag |
171 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
10431223 |
aatcagtttttcccttttcaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgatgaaattgttaaaatagagattgatag |
10431126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 409 - 464
Target Start/End: Complemental strand, 38066752 - 38066697
Alignment:
| Q |
409 |
atgttgctaattactaattatgttttaattttattttctggttcaatctcaacatt |
464 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
38066752 |
atgttgctaattactaattatgtcttaattttattttatggttcaacctcaacatt |
38066697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 10978468 - 10978507
Alignment:
| Q |
247 |
ttgaatgttgaaattgctaaaatagagattgataaagatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10978468 |
ttgaatgttgaaattgctaaaatagagattgatagagatt |
10978507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 48208811 - 48208850
Alignment:
| Q |
247 |
ttgaatgttgaaattgctaaaatagagattgataaagatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48208811 |
ttgaatgttgaaattgctaaaatagagattgatagagatt |
48208850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 9579172 - 9579133
Alignment:
| Q |
247 |
ttgaatgttgaaattgctaaaatagagattgataaagatt |
286 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
9579172 |
ttgaatgttgaaattactaaaatagagattgatagagatt |
9579133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 9584867 - 9584828
Alignment:
| Q |
247 |
ttgaatgttgaaattgctaaaatagagattgataaagatt |
286 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
9584867 |
ttgaatgttgaaattactaaaatagagattgatagagatt |
9584828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 38 - 480
Target Start/End: Complemental strand, 19741021 - 19740580
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19741021 |
accaaatcatcactgattctcaactctcaaggtttcaatcagtttttccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
19740922 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19740921 |
tgaatgttgaaattgttaaaatagagatagatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaacaa |
19740822 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19740821 |
cactgtttgttgaatgttgaaattgctaaa-tagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttctgca |
19740723 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19740722 |
tatttactgttttgggagtttttgttaaaattaatcaaatttcagtgtataattgaatttatatatcatatatgttgctaattactaattatgttttaat |
19740623 |
T |
|
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
19740622 |
tttattttatggttcaatctcaacattgtatgtctaatgatgt |
19740580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 38 - 480
Target Start/End: Original strand, 34715814 - 34716256
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34715814 |
accaaatcatcactgattctcaactctcaaggtttaaatcagtttttccctttccaaaacaacattgtttggtaagtaaataaactttctttcattaatt |
34715913 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34715914 |
tgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaacaa |
34716013 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
34716014 |
cactgtttgttgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattggtaataattgatttctgca |
34716113 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
34716114 |
tatttactgttttgggagtttttgttaaaattattcaaattttagtgtataattgaatttatatatcatatatgttgctaattactaattatgttataat |
34716213 |
T |
|
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
34716214 |
tttattttatggttcaatctcaacattgtatgtctaatgatgt |
34716256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 38 - 480
Target Start/End: Original strand, 34693402 - 34693844
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34693402 |
accaaatcatcactgattctcaactctcaaggtttaaatcagtttttccctttccaaaacaacattgtttggtaagtaaataaactttctttcattaatt |
34693501 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34693502 |
tgaatgttgaaattgctaaaatagagattgatagagatttattgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaacaa |
34693601 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
34693602 |
cactgtttgttgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattggtaataattgatttctgca |
34693701 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
34693702 |
tatttactgttttgggagtttttgttaaaattattcaaattttagtgtataattgaatttatatatcatatatgttgctaattactaattatgttataat |
34693801 |
T |
|
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
34693802 |
tttattttatggttcaatctcaacattgtatgtctaatgatgt |
34693844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 55 - 286
Target Start/End: Complemental strand, 29940361 - 29940130
Alignment:
| Q |
55 |
tctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgct |
154 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29940361 |
tctcaactctcaaggtttcaatcaattttcccctttccaaaacaacactgtctggtaagtaaataaactctctttcattaatttgaatgttgaaattgct |
29940262 |
T |
|
| Q |
155 |
aaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaacactgtttattgaatgt |
254 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
29940261 |
aaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaacaactctgtttgttgaatgt |
29940162 |
T |
|
| Q |
255 |
tgaaattgctaaaatagagattgataaagatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
29940161 |
tgaaattgctaaaatagagattgatagagatt |
29940130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 282 - 445
Target Start/End: Original strand, 40445408 - 40445571
Alignment:
| Q |
282 |
agattgatagagatttggttgattattaacagaattagtaataattgatttcagcatatttactgttttgggagtttttgttaaaattattcaaatttct |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40445408 |
agattgatagagatttggttgattattaacaaaattagtaataattaatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttca |
40445507 |
T |
|
| Q |
382 |
gtgtataattgaatttatataacatatatgttgctaattactaattatgttttaattttatttt |
445 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40445508 |
gtgtataattgaatttatatatcatatatgttgctaattactaattatgtttttattttatttt |
40445571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 40445272 - 40445347
Alignment:
| Q |
60 |
actctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaattt |
138 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40445272 |
actctcaaggttccaatc-gttttcccctttccaaaa--acattgtttggtaagtaaataacctctctttcattaattt |
40445347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 29940169 - 29940128
Alignment:
| Q |
137 |
ttgaatgttgaaattgctaaaatagagattgatagaaatttg |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29940169 |
ttgaatgttgaaattgctaaaatagagattgatagagatttg |
29940128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 40445383 - 40445424
Alignment:
| Q |
137 |
ttgaatgttgaaattgctaaaatagagattgatagaaatttg |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40445383 |
ttgaatgttgaaattgctaaaatagagattgatagagatttg |
40445424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 317
Target Start/End: Complemental strand, 29940144 - 29940109
Alignment:
| Q |
282 |
agattgatagagatttggttgattattaacagaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
29940144 |
agattgatagagatttggttgattattaacagaatt |
29940109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 40445383 - 40445416
Alignment:
| Q |
247 |
ttgaatgttgaaattgctaaaatagagattgata |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40445383 |
ttgaatgttgaaattgctaaaatagagattgata |
40445416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 480
Target Start/End: Original strand, 40445867 - 40445909
Alignment:
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
40445867 |
tttattttatggttcaacctcaacattgtatgtctaatgatgt |
40445909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 480
Target Start/End: Original strand, 40506498 - 40506540
Alignment:
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
40506498 |
tttattttatggttcaacctcaacattgtatgtctaatgatgt |
40506540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 38 - 480
Target Start/End: Complemental strand, 21741707 - 21741265
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21741707 |
accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
21741608 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
21741607 |
tgaatgttgaaattgctaaaataaagattgataaaaatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttccccttttcaaaacaa |
21741508 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
21741507 |
cactgtttgttgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacataattagtaataattgatttctgca |
21741408 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
21741407 |
tatttactgtattgaaagtttttgttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgttgctaatgactaattatgttttaat |
21741308 |
T |
|
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
21741307 |
tttattttatggttcaatctcaacattgtatgtctaatgatgt |
21741265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 38 - 480
Target Start/End: Original strand, 5316021 - 5316451
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316021 |
accaaatcatcactgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
5316120 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| || |
|
|
| T |
5316121 |
tgaatgttgaaattgctaaaatagagattgatataaatttgttgaatgttgaaaacaacactgtttcaaatttcaattggttttcccctttccaaaataa |
5316220 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5316221 |
caccgtttgttgaatgttgaaattgctaaaatag----------agattgatagagatttggttgattattaacagaattagtaataattgatttctgca |
5316310 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||| | |||||| ||||||||||||||||||| |||||| |
|
|
| T |
5316311 |
tatttacagttttgggagtttttgttaaaattatttaaattttggtatataattgaatttatacatcatata--ttgctaattactaattatggtttaat |
5316408 |
T |
|
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
5316409 |
tttattttatggttgaatctcaacattgtatgtctaatgatgt |
5316451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 137 - 427
Target Start/End: Original strand, 50881019 - 50881309
Alignment:
| Q |
137 |
ttgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaaca |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
50881019 |
ttgaatgttgaaattgctaaaatagagattgatagtgatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttccccttttcaaaaca |
50881118 |
T |
|
| Q |
237 |
acactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagc |
336 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
50881119 |
atactgtttgttgaatgttgaaattgctaaaatagagattgataaagattgataaaaatttggttgattattaacataattagtaataattaatttctac |
50881218 |
T |
|
| Q |
337 |
atatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaatt |
427 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50881219 |
atatttactattttgagagtttttgttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgttgctaattactaatt |
50881309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 175 - 459
Target Start/End: Complemental strand, 4977512 - 4977238
Alignment:
| Q |
175 |
tttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaacactgtttattgaatgttgaaattgctaaaatagaga |
274 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4977512 |
tttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctgtccaaaacaacactgtttgttgaatgttgaaattgctaaaatagaga |
4977413 |
T |
|
| Q |
275 |
ttgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagcatatttactgttttgggagtttttgttaaaattattca |
374 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4977412 |
ttgata----------gagatttggttgattattaacagaattagtaataattgatttctgcatatttactgttttgggagtttttgttaaaattattca |
4977323 |
T |
|
| Q |
375 |
aatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaattttattttctggttcaatctca |
459 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
4977322 |
aatttcagtgtataattgaatttatatataatatatgttgctaattactaattatgttttaattttattttatggtttaatctca |
4977238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 51 - 280
Target Start/End: Original strand, 50880824 - 50881052
Alignment:
| Q |
51 |
tgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaat |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50880824 |
tgattctcaactctcaaggtttcaataagtttttccctttccaaaacaa-actgtttggtaagtaaataaactgtctttcattaatttgaatgttgaaat |
50880922 |
T |
|
| Q |
151 |
tgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaacactgtttattga |
250 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
50880923 |
tgctaaaatagagattgatagtgatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttccccttttcaaaacaatactgtttgttga |
50881022 |
T |
|
| Q |
251 |
atgttgaaattgctaaaatagagattgata |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
50881023 |
atgttgaaattgctaaaatagagattgata |
50881052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 55 - 259
Target Start/End: Complemental strand, 4977700 - 4977496
Alignment:
| Q |
55 |
tctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgct |
154 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4977700 |
tctcaactctcaaggtttcaattggttttcccctttccaaaacaacattgtttggtaagtaaagaaactctctttcattaatttgaatgttgaaattgct |
4977601 |
T |
|
| Q |
155 |
aaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaacactgtttattgaatgt |
254 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| |
|
|
| T |
4977600 |
aaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctgtccaaaacaacattgtttgttgaatgt |
4977501 |
T |
|
| Q |
255 |
tgaaa |
259 |
Q |
| |
|
||||| |
|
|
| T |
4977500 |
tgaaa |
4977496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 327 - 480
Target Start/End: Original strand, 23182309 - 23182464
Alignment:
| Q |
327 |
tgatttcagcatattta--ctgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattacta |
424 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23182309 |
tgatttctgcatatttataccgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatatataatatatgttgctaattacta |
23182408 |
T |
|
| Q |
425 |
attatgttttaattttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
23182409 |
attatgttttaattttattttatggttcaatctcaacattgtatgtctaatgatgt |
23182464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 23182180 - 23182310
Alignment:
| Q |
70 |
tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat |
169 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23182180 |
tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaactctctttaattaatttgaatgttgaaatccctaaaatagagattgat |
23182279 |
T |
|
| Q |
170 |
agaaatttgttgaatgttgaaaacagcactg |
200 |
Q |
| |
|
||| |||||||||||||||| |||| ||||| |
|
|
| T |
23182280 |
agagatttgttgaatgttgagaacaacactg |
23182310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 4977440 - 4977399
Alignment:
| Q |
137 |
ttgaatgttgaaattgctaaaatagagattgatagaaatttg |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4977440 |
ttgaatgttgaaattgctaaaatagagattgatagagatttg |
4977399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 4977618 - 4977579
Alignment:
| Q |
247 |
ttgaatgttgaaattgctaaaatagagattgataaagatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4977618 |
ttgaatgttgaaattgctaaaatagagattgatagagatt |
4977579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 4977479 - 4977441
Alignment:
| Q |
70 |
tttcaatcagttttcccctttccaaaacaacactgtttg |
108 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
4977479 |
tttcaatcggttttcccctgtccaaaacaacactgtttg |
4977441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 38 - 458
Target Start/End: Complemental strand, 3954669 - 3954250
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3954669 |
accaaatcatcagtgattctcaactctcaag-tttcaatcagttttcccatttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
3954571 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3954570 |
tgaatgttgaaattgttaaaatagagattgatagagatttgttgaatgttgaaaacaaccctgtttcaaatttcaatcggttttcccctttccaaaacaa |
3954471 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |
|
|
| T |
3954470 |
cactgtttgttgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaagtagtaataattgatttctgaa |
3954371 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
3954370 |
tatttactgttttgggagtttttgttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgttgctaattactaattatgtttttat |
3954271 |
T |
|
| Q |
438 |
tttattttctggttcaatctc |
458 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
3954270 |
tttattttatggttcaatctc |
3954250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 102 - 286
Target Start/End: Complemental strand, 8073802 - 8073618
Alignment:
| Q |
102 |
ctgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
8073802 |
ctgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactgt |
8073703 |
T |
|
| Q |
202 |
ttcaaatttcaatcggttttccaatttccaaaacaacactgtttattgaatgttgaaattgctaaaatagagattgataaagatt |
286 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8073702 |
ttcaaatttcaatcggttttcccctttctaaaacaacactgtttgttgaatgttgaaattgctaaaatagagattgatagagatt |
8073618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 409 - 472
Target Start/End: Complemental strand, 54577929 - 54577866
Alignment:
| Q |
409 |
atgttgctaattactaattatgttttaattttattttctggttcaatctcaacattgtatgtct |
472 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
54577929 |
atgttgctaattactaattatatcttaattttattttatggttcaacctcaacattgtatgtct |
54577866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 8073657 - 8073616
Alignment:
| Q |
137 |
ttgaatgttgaaattgctaaaatagagattgatagaaatttg |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8073657 |
ttgaatgttgaaattgctaaaatagagattgatagagatttg |
8073616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 317
Target Start/End: Complemental strand, 8073632 - 8073597
Alignment:
| Q |
282 |
agattgatagagatttggttgattattaacagaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8073632 |
agattgatagagatttggttgattattaacagaatt |
8073597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 8073696 - 8073658
Alignment:
| Q |
70 |
tttcaatcagttttcccctttccaaaacaacactgtttg |
108 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
8073696 |
tttcaatcggttttcccctttctaaaacaacactgtttg |
8073658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 38 - 458
Target Start/End: Original strand, 41878432 - 41878851
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41878432 |
accaaatcatcactgattctcaactctcaag-tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatt |
41878530 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
41878531 |
tgaatgttgaaattgttaaaatagagattgatagagatttgttgaatgttgaaaacaacattgtttcaattttcaatcggttttcccctttccaaaacaa |
41878630 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
41878631 |
cactgtttgttgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaaccgaaatagtaataattgatttctgca |
41878730 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
41878731 |
tatttattgttttgggaatttttgttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgttgctaattactaattatgtttttat |
41878830 |
T |
|
| Q |
438 |
tttattttctggttcaatctc |
458 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
41878831 |
tttattttatggttcaatctc |
41878851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 327 - 480
Target Start/End: Original strand, 45472696 - 45472849
Alignment:
| Q |
327 |
tgatttcagcatatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaat |
426 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
45472696 |
tgatttctgcatatttactgttttgggagtttttgttaaaattattcaaatttctgtgtttaattgaatttatatataatatatgttgttaattactaat |
45472795 |
T |
|
| Q |
427 |
tatgttttaattttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
45472796 |
tatgttttaattttatgttatggttcaatctcaacattgtatgtctaatgatgt |
45472849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 45472560 - 45472679
Alignment:
| Q |
70 |
tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat |
169 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45472560 |
tttcaattggttttcccctttccaaaacaacactatttggtaagtaaagaaactctctttcattaatttgaatgttgaaatctctaaaatagagattgat |
45472659 |
T |
|
| Q |
170 |
agaaatttgttgaatgttga |
189 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
45472660 |
agagatttgttgaatgttga |
45472679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 38 - 442
Target Start/End: Original strand, 30853532 - 30853935
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30853532 |
accaaatcatcattgattctcaactctcaagatttcaatcagttttcccctttccaaaacaatagtgtttggtaagtaaataaactctctttaattaatt |
30853631 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
30853632 |
tgaatgttgaaattgctaaa-tagagattgatagagatttgttgaatgttgaaaacaacactgtgtcaaatttcaatcggttttcccctttccaaaacaa |
30853730 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
30853731 |
cactgtttgttgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattaataataattgatttatgca |
30853830 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30853831 |
tatttactgttttgggagtttttgttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgttgctaattactaattatgttttaat |
30853930 |
T |
|
| Q |
438 |
tttat |
442 |
Q |
| |
|
||||| |
|
|
| T |
30853931 |
tttat |
30853935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 38 - 480
Target Start/End: Original strand, 27078455 - 27078887
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
27078455 |
accaaatcatcactgattctcaactctcaagatttcaatcagttttcccctttccaaaacaacacagtttgataagtaaataaactctctttcattaatt |
27078554 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
27078555 |
tgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactgtttcaaattacaatcggttttccccttttcaaaacaa |
27078654 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
27078655 |
cactgtttgttgaatgttaaaattgctcaaatag----------agattgatagagatttggttgattattaactgaattagtaataattgatttctgca |
27078744 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaattattcaaatttctgtgtataattgaatttatataacatatatgttgctaattactaattatgttttaat |
437 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27078745 |
tatttactgttttgggagttttttttaaaattattcaaatttcagtgtataattgaatttatatatcatatatgttgctaattactaattatgttttaat |
27078844 |
T |
|
| Q |
438 |
tttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
27078845 |
tttattttatggttcaatctcaacattgtatgtctaatgatgt |
27078887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 38 - 370
Target Start/End: Complemental strand, 22987263 - 22986932
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22987263 |
accaaatcatcattcattctcaactctcaaggtttcaatcagttttcccctttccaaaacaatactgtttggtaagtaaataaactctctttcattaatt |
22987164 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22987163 |
tgaatgttgaaattgctaaaatagagattgatagagatttgtagaatgttgaaaacaacactgtttcaaatttcaatcggttttcccctttccaaaacaa |
22987064 |
T |
|
| Q |
238 |
cactgtttattgaatgttgaaattgctaaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagca |
337 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
22987063 |
cactgtttgttgaatgttgaaattgat-aaatagagattgataaagattgatagagatttgattgattattaacacaattattaataattgatttctgca |
22986965 |
T |
|
| Q |
338 |
tatttactgttttgggagtttttgttaaaatta |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22986964 |
tatttactgttttgggagtttttgttaaaatta |
22986932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 68 - 413
Target Start/End: Complemental strand, 23285674 - 23285335
Alignment:
| Q |
68 |
ggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattg |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23285674 |
ggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattg |
23285575 |
T |
|
| Q |
168 |
atagaaatttgttgaatgttgaaaacagcactgtttcaaatttcaatcggttttccaatttccaaaacaacact----gtttattgaatgttgaaattgc |
263 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
23285574 |
atagagatttgttgaatgttgaaaacaacactgtttcaaatttcaatcgattttcccctttccaaaacaacactgtttgtttgttgaatgttgaaattgc |
23285475 |
T |
|
| Q |
264 |
taaaatagagattgataaagattgatagagatttggttgattattaacagaattagtaataattgatttcagcatatttactgttttgggagtttttgtt |
363 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23285474 |
taaaatag----------agattgatagagatttggttgattattaacagaattagtaataattgatttctgcatatttactgttttgggagtttttgtt |
23285385 |
T |
|
| Q |
364 |
aaaattattcaaatttctgtgtataattgaatttatataacatatatgtt |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
23285384 |
aaaattattcaaattttagtgtataattgaatttatatatcatatatgtt |
23285335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 16592633 - 16592486
Alignment:
| Q |
38 |
accaaaacatcaatgattctcaactctcaaggtttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
137 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16592633 |
accaaatcatcaattattctcaactctcaaagtttcaatcagttttccccttttcaaaacaacactgtttggtaagtaaataaactctctttcattaatt |
16592534 |
T |
|
| Q |
138 |
tgaatgttgaaattgctaaaatagagattgatagaaatttgttgaatg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16592533 |
tgaatgttgaaattgctaaaatagagattgatagagatttgttgaatg |
16592486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 415 - 480
Target Start/End: Complemental strand, 23285034 - 23284969
Alignment:
| Q |
415 |
ctaattactaattatgttttaattttattttctggttcaatctcaacattgtatgtctgatgatgt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||||||| |
|
|
| T |
23285034 |
ctaattactaattatgttttaattttattttatggtttaatctcaacattgtatgtataatgatgt |
23284969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 16592534 - 16592495
Alignment:
| Q |
247 |
ttgaatgttgaaattgctaaaatagagattgataaagatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16592534 |
ttgaatgttgaaattgctaaaatagagattgatagagatt |
16592495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 182355 - 182410
Alignment:
| Q |
409 |
atgttgctaattactaattatgttttaattttattttctggttcaatctcaacatt |
464 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
182355 |
atgttgctaattactaattatgtcttaattttattttatggttcaacctcaacatt |
182410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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