View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15602_high_39 (Length: 306)
Name: NF15602_high_39
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 47717442 - 47717730
Alignment:
| Q |
1 |
gagaccaaaacaaccatgtctttattggatctggtatcgcgtatggatttaccgagaactcgaacgcccaataagaattcatctccgtataaaagagtaa |
100 |
Q |
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| T |
47717442 |
gagaccaaaacaaccatgtctttattggatctggtgtcgcgtatggatttaccgagaactcgaacgcccaataagaattcatctccgtataaaagagtaa |
47717541 |
T |
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| Q |
101 |
cgtatgcttcttcatcgttagatcctaaacaggtttggaattgaatagagagtagagaaataagcaagcataataaccaacggtaactactacttgtact |
200 |
Q |
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| T |
47717542 |
cgtatgcttcttcatcgttagatcctaaacaggtttggaattgaatagagagtagagaaataagcaagcataataaccaacggtaactactacttgtact |
47717641 |
T |
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| Q |
201 |
gtttggtttcattgtagcagcttgattctgaattgaagaagaagaagaaggttaaagttgaatttaaatgttctctttcgtgttcactcttctctgct |
298 |
Q |
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| T |
47717642 |
gtttggtttcattgtagcagcttgattctgaatt---------gaagaaggttaaagttgaatttaaatgttctctttcgtgttcactcgtctctgct |
47717730 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 35796866 - 35796775
Alignment:
| Q |
1 |
gagaccaaaacaaccatgtctttattggatctggtatcgcgtatggatttaccgagaactcgaacgcccaataagaattcatctccgtataa |
92 |
Q |
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| T |
35796866 |
gagactaaaacaaccatatccttgtttgatcgagtatcgcgtatcgattttccaagaaccctaacgcctaacaagaattcatctccgtataa |
35796775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 36880930 - 36880964
Alignment:
| Q |
197 |
tactgtttggtttcattgtagcagcttgattctga |
231 |
Q |
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| T |
36880930 |
tactgtttggtttcactgtagcagcttgattctga |
36880964 |
T |
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