View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15602_high_41 (Length: 300)

Name: NF15602_high_41
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15602_high_41
NF15602_high_41
[»] chr1 (1 HSPs)
chr1 (6-300)||(33585664-33585954)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 33585664 - 33585954
Alignment:
Q  6 aggagcacagattgaacagacctcagtgattgtgaaggtggccatggtttgatctcatgaacatggatgatatagttaacttgaattgaatctgaaacag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33585664 aggagcacagattgaacagacctcagtgattgtgaaggtggccatggtttgatctcatgaacatggatgatgtagttaacttgaattgaatctgaaacag 33585763  T
Q  106 tttttctactctttgttcttattcccaataccatcttcaccaaaaattaaccagtgctattattctttgttgctaaatgatgaaacaaaaacacagaaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33585764 tttttctactctttgttcttattcccaataccatcttcaccaaaaattaaccagtgctattattctttgttgctaaatgatgaaacaaaaacacagaaac 33585863  T
Q  206 aaaagttagatnnnnnnnnnnngaaaaggatggtctaatacatttcacacatacttaacttccataattaacataaataatttagttagttaaaa 300  Q
    |||||||||||            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33585864 aaaagttagataaaaaaaa----aaagggatggtctaatacatttcacacatacttaacttccataattaacataaataatttagttagttaaaa 33585954  T

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