View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15602_high_6 (Length: 466)
Name: NF15602_high_6
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_high_6 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 31 - 384
Target Start/End: Complemental strand, 30264777 - 30264423
Alignment:
| Q |
31 |
aatagtacgtacttttt-atgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatat |
129 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30264777 |
aatagtacgtacttttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatat |
30264678 |
T |
|
| Q |
130 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30264677 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
30264578 |
T |
|
| Q |
230 |
attctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
329 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30264577 |
attctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
30264478 |
T |
|
| Q |
330 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30264477 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatg |
30264423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 31 - 384
Target Start/End: Original strand, 30287411 - 30287765
Alignment:
| Q |
31 |
aatagtacgtactttt-tatgtgttttagtgtttatatttccttacatatctatcatataacaaatattaacatgtgcatgtgcatgcaaccatgtatat |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30287411 |
aatagtacgtacttttttatgtgttttagtgtttatatttccttacatatttatcatataacaaatattaacatgtgcatatgcatgcaaccatgtatat |
30287510 |
T |
|
| Q |
130 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287511 |
aggtgagagataaagatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattga |
30287610 |
T |
|
| Q |
230 |
attctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
329 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30287611 |
attctatgatcaagattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatcca |
30287710 |
T |
|
| Q |
330 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30287711 |
acaagcaatgctgcttacaccataatattcaaacttcatcatgcacttggtgatg |
30287765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 125 - 341
Target Start/End: Complemental strand, 30271576 - 30271360
Alignment:
| Q |
125 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
224 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||| |
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|
| T |
30271576 |
tatataggtgagagacaaagatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatca |
30271477 |
T |
|
| Q |
225 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
324 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || | |
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|
| T |
30271476 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaat |
30271377 |
T |
|
| Q |
325 |
atccaacaagcaatgct |
341 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
30271376 |
atccaacaagaaatgct |
30271360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 125 - 341
Target Start/End: Original strand, 30280613 - 30280829
Alignment:
| Q |
125 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
224 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30280613 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30280712 |
T |
|
| Q |
225 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
324 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30280713 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30280812 |
T |
|
| Q |
325 |
atccaacaagcaatgct |
341 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30280813 |
atccaacaagcaatgct |
30280829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 125 - 341
Target Start/End: Complemental strand, 30304643 - 30304427
Alignment:
| Q |
125 |
tatataggtgagagataaagatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtca |
224 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| ||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||| |
|
|
| T |
30304643 |
tatataggtgagagatcaagatggcaaaatgatgtggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatca |
30304544 |
T |
|
| Q |
225 |
attgaattctatgatcatgattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagt |
324 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || | |
|
|
| T |
30304543 |
attgaattgtatgatcaatattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaat |
30304444 |
T |
|
| Q |
325 |
atccaacaagcaatgct |
341 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30304443 |
atccaacaagcaatgct |
30304427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 30048723 - 30048621
Alignment:
| Q |
282 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatg |
381 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30048624 |
T |
|
| Q |
382 |
atg |
384 |
Q |
| |
|
||| |
|
|
| T |
30048623 |
atg |
30048621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 30063064 - 30062962
Alignment:
| Q |
282 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatg |
381 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttggtg |
30062965 |
T |
|
| Q |
382 |
atg |
384 |
Q |
| |
|
||| |
|
|
| T |
30062964 |
atg |
30062962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 30032483 - 30032381
Alignment:
| Q |
276 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
375 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
376 |
ttg |
378 |
Q |
| |
|
||| |
|
|
| T |
30032383 |
ttg |
30032381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 30228850 - 30228760
Alignment:
| Q |
294 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttgatgatg |
384 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttggtgatg |
30228760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 30228750 - 30228710
Alignment:
| Q |
404 |
tcatgagtgctcttctttcttgtcttcatagagctgatgat |
444 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30228750 |
tcatgagtgctcttctttcttgtcttcaaagagctgatgat |
30228710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 30264413 - 30264373
Alignment:
| Q |
404 |
tcatgagtgctcttctttcttgtcttcatagagctgatgat |
444 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264413 |
tcatgggtgctcttctttcttgtcttcatagagctgatgat |
30264373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 30287775 - 30287815
Alignment:
| Q |
404 |
tcatgagtgctcttctttcttgtcttcatagagctgatgat |
444 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287775 |
tcatgggtgctcttctttcttgtcttcatagagctgatgat |
30287815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 30032365 - 30032325
Alignment:
| Q |
404 |
tcatgagtgctcttctttcttgtcttcatagagctgatgat |
444 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
30032365 |
tcatgggtgctcttctttcttgtcttcaaagagctgatgat |
30032325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 30048611 - 30048571
Alignment:
| Q |
404 |
tcatgagtgctcttctttcttgtcttcatagagctgatgat |
444 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
30048611 |
tcatgggtgctcttctttcttgtcttcaaagagctgatgat |
30048571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 30062952 - 30062912
Alignment:
| Q |
404 |
tcatgagtgctcttctttcttgtcttcatagagctgatgat |
444 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
30062952 |
tcatgggtgctcttctttcttgtcttcaaagagctgatgat |
30062912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 30220314 - 30220354
Alignment:
| Q |
404 |
tcatgagtgctcttctttcttgtcttcatagagctgatgat |
444 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
30220314 |
tcatgggtgctcttctttcttgtcttcaaagagctgatgat |
30220354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 30220209 - 30220261
Alignment:
| Q |
289 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgct |
341 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| |
|
|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgct |
30220261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 79679 - 79601
Alignment:
| Q |
300 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttg |
378 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || |||||||||||||||||||||||| |
|
|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttg |
79601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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