View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15602_low_1 (Length: 515)
Name: NF15602_low_1
Description: NF15602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15602_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 22 - 500
Target Start/End: Complemental strand, 34594307 - 34593829
Alignment:
| Q |
22 |
gacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatcttcctcttcagaaattttactacaacaaatactcataaacccaagaatcata |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594307 |
gacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatcttcctcttcagaaattttactacaacaaatactcataaacccaagaatcata |
34594208 |
T |
|
| Q |
122 |
tcaaccaaagatttcacttccttcattactttcttttcccttttcaattcaaaaagttccttaacaacactatgtatcataaaaacaacaggagcaagta |
221 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594207 |
tcaaccaaagatttcacttccttcattgctttcttttcccttttcaattcaaaaagttccttaacaacactatgtatcataaaaacaacaggagcaagta |
34594108 |
T |
|
| Q |
222 |
aagcaatactctttgaaccaccaacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaag |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594107 |
aagcaatactctttgaaccaccaacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaag |
34594008 |
T |
|
| Q |
322 |
agattttctgcaaccaaatttgattgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcaatggaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594007 |
agattttctgcaaccaaatttgattgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcaatggaa |
34593908 |
T |
|
| Q |
422 |
tgagaaaattcaggggattctttgggaagttttgatagaatttcttgcatggtgtttttcagcctgagggtgtagtttt |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34593907 |
tgagaaaattcaggggattctttgggaagttttgatagaatttcttgcatggtgtttttcagcttgagggtgtagtttt |
34593829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 22 - 500
Target Start/End: Complemental strand, 34738554 - 34738076
Alignment:
| Q |
22 |
gacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatcttcctcttcagaaattttactacaacaaatactcataaacccaagaatcata |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738554 |
gacccaaagacgagccaaatcattcaaagacaaaaccaaatccaaatctttctcttcagaaattttactacaacaaatactcataaacccaagaatcata |
34738455 |
T |
|
| Q |
122 |
tcaaccaaagatttcacttccttcattactttcttttcccttttcaattcaaaaagttccttaacaacactatgtatcataaaaacaacaggagcaagta |
221 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34738454 |
tcaaccagagatttcacttccttcattactttcttctcctttttcacttcaaaaagttccttaacaacactatgtattataaaaacaacaggagcaagta |
34738355 |
T |
|
| Q |
222 |
aagcaatactctttgaaccaccaacagaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaag |
321 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34738354 |
aagcaatactctttgaaccaccaacaaaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagatatcacctttaag |
34738255 |
T |
|
| Q |
322 |
agattttctgcaaccaaatttgattgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcaatggaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34738254 |
agattttctgcaaccaaatttgattgcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcactggaa |
34738155 |
T |
|
| Q |
422 |
tgagaaaattcaggggattctttgggaagttttgatagaatttcttgcatggtgtttttcagcctgagggtgtagtttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
34738154 |
tgagaaaattcaggggattctttgggaagttctgatagaatttcttgcattgtgtttttcagcttgagggtgtagtttt |
34738076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 47 - 500
Target Start/End: Complemental strand, 34622291 - 34621838
Alignment:
| Q |
47 |
aaagacaaaaccaaatccaaatcttcctcttcagaaattttactacaacaaatactcataaacccaagaatcatatcaaccaaagatttcacttccttca |
146 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34622291 |
aaagacaaaaccaaatccaaatctttctcttcagaaattttactacaacaaatactcataaacccaagaatcatatcaaccaaagatttcacttccttca |
34622192 |
T |
|
| Q |
147 |
ttactttcttttcccttttcaattcaaaaagttccttaacaacactatgtatcataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaac |
246 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34622191 |
ttgctttcttttcccttttcaattcaaaaagttccttaacaacactatgtatcataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaac |
34622092 |
T |
|
| Q |
247 |
agaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaagagattttctgcaaccaaatttgatt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
34622091 |
agaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagatatcacctttaagagattttctgcaaccaaatttgatt |
34621992 |
T |
|
| Q |
347 |
gcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcaatggaatgagaaaattcaggggattctttgg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34621991 |
gcagaatagacccatatcacatcaaaaggtgggtcaactttggtttgcatcagttcatgtaatgcatcactggaatgagaaaattcaggggattctttgg |
34621892 |
T |
|
| Q |
447 |
gaagttttgatagaatttcttgcatggtgtttttcagcctgagggtgtagtttt |
500 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
34621891 |
gaagttctgatagaatttcttgcattgtgtttttcagcttgagggtgtagtttt |
34621838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 47 - 500
Target Start/End: Complemental strand, 34749730 - 34749275
Alignment:
| Q |
47 |
aaagacaaaaccaaatccaaatcttcctcttcagaaattttactacaacaaatactcataaacccaagaatcatatcaaccaaagatttcacttccttca |
146 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34749730 |
aaagacaaaaccaaatccaaatctttctcttcagaaattttactacaacaaatactcataaacccaagaatcatatcaaccaaagatttcacttccttca |
34749631 |
T |
|
| Q |
147 |
ttactttcttttcccttttcaattcaaaaagttccttaacaacactatgtatcataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaac |
246 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34749630 |
ttgctttcttttcccttttcaattcaaaaagttccttaacaacactatgtatcataaaaacaacaggagcaagtaaagcaatactctttgaaccaccaac |
34749531 |
T |
|
| Q |
247 |
agaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagttatcacctttaagagattttctgcaaccaaatttgatt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
34749530 |
agaagctgaacaagcagaaatcagctgaaaaagtgcttttgcagctgaaatttgttccaagatatcacctttaagagattttctgcaaccaaatttgatt |
34749431 |
T |
|
| Q |
347 |
gcagaatagacccatatcacatcaaaa-ggtgggt-caactttggtttgcatcagttcatgtaatgcatcaatggaatgagaaaattcaggggattcttt |
444 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
34749430 |
gcagaatagacccatatcacatcaaaagggtgggtccaacttgggtttgcatcagttcatgtaatgcatcactggaatgagaaaattcaggggattcttt |
34749331 |
T |
|
| Q |
445 |
gggaagttttgatagaatttcttgcatggtgtttttcagcctgagggtgtagtttt |
500 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
34749330 |
gggaagttctgatagaatttcttgcattgtgtttttcagcttgagggtgtagtttt |
34749275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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