View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15603_low_3 (Length: 210)

Name: NF15603_low_3
Description: NF15603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15603_low_3
NF15603_low_3
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-210)||(143693-143902)
scaffold0002 (1-210)||(151998-152207)
scaffold0002 (3-210)||(133647-133854)
[»] chr3 (4 HSPs)
chr3 (1-210)||(13163086-13163295)
chr3 (1-210)||(13335010-13335219)
chr3 (1-165)||(13346252-13346416)
chr3 (3-210)||(13173134-13173341)


Alignment Details
Target: scaffold0002 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 143693 - 143902
Alignment:
Q  1 accatctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143693 accatctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 143792  T
Q  101 tcacaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattggggacttcctgtagacccttgtatacctatttcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||| ||    
T  143793 tcacaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattgggaacttcctgtagaccaatttatacctattttgt 143892  T
Q  201 ttaatgagga 210  Q
    ||||||||||    
T  143893 ttaatgagga 143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 151998 - 152207
Alignment:
Q  1 accatctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  151998 accatctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 152097  T
Q  101 tcacaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattggggacttcctgtagacccttgtatacctatttcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||| ||    
T  152098 tcacaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattgggaacttcctgtagaccaatttatacctattttgt 152197  T
Q  201 ttaatgagga 210  Q
    ||||||||||    
T  152198 ttaatgagga 152207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 133647 - 133854
Alignment:
Q  3 catctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggtatc 102  Q
    |||||||||||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |    
T  133647 catctgttggaaaagcagcgagagatggaagatcacaaagttccaagaatcgaagacaaatgctgctccaaataattttgggtaacgaaaacagggtagc 133746  T
Q  103 acaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattggggacttcctgtagacccttgtatacctatttcgttt 202  Q
    ||||||   |||| || ||| ||| |||| ||| ||||| ||||| |||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||    
T  133747 acaatacatgatttttacactttgtagcaaacagggagattcaatttcaagtaacaacaattgggaacttcctgtagactcttttatacctattttgttt 133846  T
Q  203 aatgagga 210  Q
    ||||||||    
T  133847 aatgagga 133854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13163295 - 13163086
Alignment:
Q  1 accatctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13163295 accatctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 13163196  T
Q  101 tcacaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattggggacttcctgtagacccttgtatacctatttcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||||||||||| ||    
T  13163195 tcacaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattgggaacttcctgtagaccaatttatacctattttgt 13163096  T
Q  201 ttaatgagga 210  Q
    ||||||||||    
T  13163095 ttaatgagga 13163086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13335219 - 13335010
Alignment:
Q  1 accatctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13335219 accatctgttggaaaagcagcgagagatggaagatcataaagttccaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 13335120  T
Q  101 tcacaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattggggacttcctgtagacccttgtatacctatttcgt 200  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13335119 tcacaataactgattgttgcactttgaagcacacaaggagaatcaatctcaagtaacaaccattgggaacttcctgtagacccttgtatacctatttcgt 13335020  T
Q  201 ttaatgagga 210  Q
    ||||||||||    
T  13335019 ttaatgagga 13335010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 13346416 - 13346252
Alignment:
Q  1 accatctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggta 100  Q
    ||||| |||||||||||||||||||||||||| || || ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13346416 accatgtgttggaaaagcagcgagagatggaagatgatgaagttccaagaatcgaagacaaatgctgctcctaataattctgggtaaagaaaacagggta 13346317  T
Q  101 tcacaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattg 165  Q
    ||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13346316 tcacaatacctgattgttgcactttgaagcacacaaggagaatcaatctcaagtaacaaccattg 13346252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 13173341 - 13173134
Alignment:
Q  3 catctgttggaaaagcagcgagagatggaacatcataaagtatcaagaatcgaagacaaatgctgctcctaataattttgggtaaagaaaacagggtatc 102  Q
    |||||||||||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |    
T  13173341 catctgttggaaaagcagcgagagatggaagatcacaaagttccaagaatcgaagacaaatgctgctccaaataattttgggtaacgaaaacagggtagc 13173242  T
Q  103 acaataatagattgttgcaccttgaagcacacaaggagaatcaatctcaagtaacaaccattggggacttcctgtagacccttgtatacctatttcgttt 202  Q
    ||||||   |||| || ||| ||| |||| ||| ||||| ||||| |||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||    
T  13173241 acaatacatgatttttacactttgtagcaaacagggagattcaatttcaagtaacaacaattgggaacttcctgtagactcttttatacctattttgttt 13173142  T
Q  203 aatgagga 210  Q
    ||||||||    
T  13173141 aatgagga 13173134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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