View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15605_high_10 (Length: 372)
Name: NF15605_high_10
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 114 - 349
Target Start/End: Original strand, 35475571 - 35475811
Alignment:
| Q |
114 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacannnnnnnnnaatacgataccaacttattatccctctcnnnnnnn |
213 |
Q |
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| T |
35475571 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacatttttttttaatacgataccaacttattatccctctcaaaaaaa |
35475670 |
T |
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| Q |
214 |
nnnnn-----gaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactgctgctttatttgtccccct |
308 |
Q |
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| T |
35475671 |
aaaaacaaaagaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactactgctttatttgtccccct |
35475770 |
T |
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| Q |
309 |
cacgttcccatatttgaactcaaaatggttgtgatgatgtc |
349 |
Q |
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| T |
35475771 |
cacgttcccatatttgaactcacaatggttgtgatgatgtc |
35475811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 35474991 - 35475084
Alignment:
| Q |
30 |
catgcacatgttagatgaatttgtggtgtatgcaaaatg-nnnnnnnnnnacaggttagattagattagattatataccactctcaagtcaataatctt |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35474991 |
catgcacatgttagatgaatttgtggtgtatgcaaaatgtttttttttttacagg-----ttagattagattatataccactctcaagtcaataatctt |
35475084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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