View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15605_high_13 (Length: 365)
Name: NF15605_high_13
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 336
Target Start/End: Original strand, 26621 - 26936
Alignment:
| Q |
21 |
acatcatcatcgccatcctctaatgaaagctcctctccactgactaattcacatgcatcatcatctatcacactttccacattcagtaaactacatgata |
120 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621 |
acattatcatcgccatcctctaacgaaagctcctctccactgactaattcacatgcatcatcatctatcacactttccacattcagtaaactacatgata |
26720 |
T |
|
| Q |
121 |
cttttgagcctgcggtatcttgaactgaattttgaagaatcaatttgcnnnnnnnctgaaaacaaactgaagaattgcattcaacaaggtaaacatagtg |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26721 |
cttttgagcctgcagtatcttgaactgaattttgaagaatcaatttgctttttttctgaaaacaaactgaagaattgcattcaacaaagtaaacatagtg |
26820 |
T |
|
| Q |
221 |
cataatataaataattagctattaggtatacgatgtaactaagaaacttcagttaactgctnnnnnnnctcaagcataaactaaatttgatcttaattgg |
320 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26821 |
cataatataaataattagctattagttatacgatgtaactaagaaacttcagttaactgctaaaaaaactcaagcataaactaaatttgatcttaattgg |
26920 |
T |
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| Q |
321 |
tgtctaaggtagatat |
336 |
Q |
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|||||||||||||||| |
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| T |
26921 |
tgtctaaggtagatat |
26936 |
T |
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