View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15605_high_15 (Length: 358)

Name: NF15605_high_15
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15605_high_15
NF15605_high_15
[»] chr5 (9 HSPs)
chr5 (1-329)||(13447067-13447396)
chr5 (1-317)||(13419516-13419833)
chr5 (1-262)||(13426407-13426669)
chr5 (13-274)||(13413183-13413445)
chr5 (124-243)||(13388988-13389108)
chr5 (123-243)||(13385167-13385288)
chr5 (124-243)||(13454143-13454263)
chr5 (16-70)||(13454035-13454089)
chr5 (4-77)||(13393562-13393635)
[»] chr4 (2 HSPs)
chr4 (16-90)||(47601353-47601427)
chr4 (193-232)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 13447067 - 13447396
Alignment:
Q  1 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttaccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13447067 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccat 13447166  T
Q  101 tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacgtgaatcaaccatgtatcccacccctactttgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  13447167 tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctactttgtc 13447266  T
Q  201 tccaactttaaac-tttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgagcaatt 299  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13447267 tccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgagcaatt 13447366  T
Q  300 attttctactcgtttcttttgattgactca 329  Q
    ||||||||||||||||||||||||||||||    
T  13447367 attttctactcgtttcttttgattgactca 13447396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 13419516 - 13419833
Alignment:
Q  1 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttaccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||| ||||| ||||  ||     
T  13419516 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcac 13419615  T
Q  101 tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacgtgaatcaaccatgtatcccacccctactttgtc 200  Q
       ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||| ||||||||||||||||||||| || ||||||||    
T  13419616 cacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtc 13419715  T
Q  201 tccaactttaaactttt-tactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgagcaatt 299  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||| |||||  |||||||| || | |||||| |||||||| |||||    
T  13419716 tccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaacaatt 13419815  T
Q  300 attttctactcgtttctt 317  Q
    |||| |||||| ||||||    
T  13419816 atttactactcatttctt 13419833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 13426407 - 13426669
Alignment:
Q  1 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttaccat 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||| ||||| ||||| ||     
T  13426407 agaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcac 13426506  T
Q  101 tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacgtgaatcaaccatgtatcccacccctactttgtc 200  Q
       ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||| ||||||||||||||||||||| |||||||||||    
T  13426507 cacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtc 13426606  T
Q  201 tccaactttaaactttt-tactttgcttcccacctctgttactacacccgtaagttcgtgcct 262  Q
    ||||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||| |||||    
T  13426607 tccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct 13426669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 13413183 - 13413445
Alignment:
Q  13 tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttaccattgaatgtttgag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||| ||||| ||||  ||    ||||         
T  13413183 tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgacta 13413282  T
Q  113 tatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacgtgaatcaaccatgtatcccacccctactttgtctccaactttaaa 212  Q
     | |||||| |||||||||||||| || |||   ||||| ||  || || |||| |||||||| || ||| || || |||||||||||||||||||||||    
T  13413283 caaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaa 13413382  T
Q  213 ctt-tttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattaca 274  Q
    ||| |  ||||||||||| || |||||||||| ||||| ||| || ||||| |||||||||||    
T  13413383 cttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca 13413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 13389108 - 13388988
Alignment:
Q  124 cagtaattctcaatatcgtcggcacaattttcacaagaacgacgtgaatcaaccatgtatcccacccctactttgtctccaactttaaactttt-tactt 222  Q
    |||||||| |||| || |||  ||||||||| ||| || |||| ||||||||||||||| || || ||||||||||||||||| || ||||||| |||||    
T  13389108 cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactt 13389009  T
Q  223 tgcttcccacctctgttacta 243  Q
    |||||||||||| ||| ||||    
T  13389008 tgcttcccacctttgtcacta 13388988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 13385288 - 13385167
Alignment:
Q  123 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacgtgaatcaaccatgtatcccacccctactttgtctccaactttaaactttt-tact 221  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||| ||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  222 ttgcttcccacctctgttacta 243  Q
    ||||||||||||| ||| ||||    
T  13385188 ttgcttcccacctttgtcacta 13385167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 13454143 - 13454263
Alignment:
Q  124 cagtaattctcaatatcgtcggcacaattttcacaagaacgacgtgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttt-actt 222  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||  |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  223 tgcttcccacctctgttacta 243  Q
    |||||||||| ||||| ||||    
T  13454243 tgcttcccacttctgtaacta 13454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 13454035 - 13454089
Alignment:
Q  16 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 70  Q
    |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454035 ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 13393635 - 13393562
Alignment:
Q  4 ggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 77  Q
    ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393635 ggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  16 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacga 90  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | |||||| |||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  193 actttgtctccaactttaaactttt-tactttgcttcccac 232  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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