View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15605_high_19 (Length: 350)
Name: NF15605_high_19
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 21 - 349
Target Start/End: Complemental strand, 11909281 - 11908953
Alignment:
| Q |
21 |
acatcatcattatataaatcttctcaatcgcttggatccaaatctgagcacctcgaggatcgtacctccccttgaaatcttcccagtgctcggaactcat |
120 |
Q |
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| T |
11909281 |
acatcatcattatgtaaatcttctcaatcgcttggatccaaatctgagcacctcgaggatcgtacctccccttgaaatcttcacggtgctcggaactcgt |
11909182 |
T |
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| Q |
121 |
cgttgcttccctgctgatttggatgccatcgctgccaaggcttcagcaattgcctgatcatttctacctcctaccgtttcttatatgcatcgccgtaaat |
220 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
11909181 |
cgttacttccctgctgatttggatgccatcgctggcaaggcttcagcaattgcctgatcatttctgcctcctaccgtttcttatatgcatcaccataaat |
11909082 |
T |
|
| Q |
221 |
cagaaaattactaaggagttaggcatttgtagtgttcacacacatgtagcctaatgtgacatgataaaaatataaaacctaggctgtatatggaccgacc |
320 |
Q |
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| T |
11909081 |
cagaaaattactaaggagttaggcatttgtagtgttcacacacatgtagcctaatatgacatgataaaaatataaaacctaggctgtatatggaccgacc |
11908982 |
T |
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| Q |
321 |
tgctctagtacaagctatataacacccta |
349 |
Q |
| |
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|||||||||||||||||| |||||||||| |
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| T |
11908981 |
tgctctagtacaagctatgtaacacccta |
11908953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 11918552 - 11918597
Alignment:
| Q |
21 |
acatcatcattatataaatcttctcaatcgcttggatccaaatctg |
66 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11918552 |
acatcatcattatgtaaatcttctcaatcgcttggatccaaatctg |
11918597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 11777447 - 11777347
Alignment:
| Q |
147 |
catcgctgccaaggcttcagcaattgcctgatcatttctacctcctaccgtttcttatatgcatcgccgtaaatcagaaaattactaaggagttaggcat |
246 |
Q |
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||||||| | |||||||| | ||||||||||||||||||||||| ||| |||||||| |||||| || ||||||| ||||| | | ||||||||||| |
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| T |
11777447 |
catcgctacaaaggcttcggtaattgcctgatcatttctacctctaaccttttcttatctgcatcacc-agaatcagacaattatttaagagttaggcat |
11777349 |
T |
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| Q |
247 |
tt |
248 |
Q |
| |
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|| |
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| T |
11777348 |
tt |
11777347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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