View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15605_high_2 (Length: 807)
Name: NF15605_high_2
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 263 - 807
Target Start/End: Complemental strand, 51064063 - 51063497
Alignment:
| Q |
263 |
gaatcagcaaagaggtgaatcatcacggtcgtttctgtgtttgtgtgtgcgttcgtgtttgactgtttgtgccttacaactatatt-------------- |
348 |
Q |
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| T |
51064063 |
gaatcagcaaagaggtgaatcatcacggtcgtttctgtgtttgtgtgtgcgttcgtgtttgactgtttgtgccttacaactatatttgttgtatcttaca |
51063964 |
T |
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| Q |
349 |
--------aactgctgcaaatgttgtcttt-atttttaacatgaaatttcttggtaaatggcgtcgttgatttttactagaattaatttgcagttttaca |
439 |
Q |
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| T |
51063963 |
actatattaactgctgcaaatgttgtcttttatttttaacatgaaatttcttggtaaatggcgtcgttgatttttactagtattaatttgcagttttaca |
51063864 |
T |
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| Q |
440 |
cactgctttgagtactggtttgtataatttagattcttagtccttagaaattccatattaatttcaggttgttgatttatgagtatgttaataatggaaa |
539 |
Q |
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| T |
51063863 |
cactgctttgagtactggtttgtataatttagattcttaatccttagaaattccatattaatttcaggttgttgatttatgagtatgttaataatggaaa |
51063764 |
T |
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| Q |
540 |
cttggagcaatggcttcatggtgccatgcggcaatatggttatcttacatgggatgcccggattaaaattcttcttggaacagccaaagcgtacgattat |
639 |
Q |
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| T |
51063763 |
cttggagcaatggcttcatggtgccatgcggcaatatggttatcttacatgggatgcccggattaaaattcttcttggaacagccaaagcgtacgattat |
51063664 |
T |
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| Q |
640 |
ttagcacatctcactgatttgttttaccagaaagttccgttttacgtttggtgagtttgcttttactgatgatctatgattttcttcgacatccggctta |
739 |
Q |
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| T |
51063663 |
ttagctcatctcactgatttgttttaccagaaagttccgttttacgtttggtgagtttacttttactgatgatctatgattttatt-gcaggctggctta |
51063565 |
T |
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| Q |
740 |
cttgcacgaggcaattgagccgaaagttgtccatcgagatatcaagtcaagtaatattcttattgatg |
807 |
Q |
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| T |
51063564 |
cttgcacgaggcaattgagccgaaagttgtccatcgagatatcaagtcaagtaatattcttattgatg |
51063497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 51064319 - 51064130
Alignment:
| Q |
7 |
tttcatgttttattagcatattttgaagcagctagtttataacatcatttatggtcatcatgcagtggacaagctgaaaaagaatttcgagtggaagttg |
106 |
Q |
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| T |
51064319 |
tttcatgttttattagcatattttgaagcagctagtttataacatcatttatggtcatcatgcagtggacaagctgaaaaagaatttagagtggaagttg |
51064220 |
T |
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| Q |
107 |
aggctattggtcatgtgaggcacaagaatttggttagacttttgggtttttgcattgaaggcactcacaggtaagcatacaatcttggtc |
196 |
Q |
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| T |
51064219 |
aggctattggtcatgtgaggcacaagaatttggttagacttttgggtttttgcattgaaggcactcacaggtaagcatacaatcttggtc |
51064130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 495 - 632
Target Start/End: Original strand, 20217236 - 20217373
Alignment:
| Q |
495 |
tattaatttcaggttgttgatttatgagtatgttaataatggaaacttggagcaatggcttcatggtgccatgcggcaatatggttatcttacatgggat |
594 |
Q |
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| T |
20217236 |
tattaatttcaggttattgatttacgagtatgttaacaatggaaatttagagcaatggcttcatggagccatgcggcagcatggctatcttacttgggaa |
20217335 |
T |
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| Q |
595 |
gcccggattaaaattcttcttggaacagccaaagcgta |
632 |
Q |
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| T |
20217336 |
gctcggatgaaaattcttcttggaacagccaaagcgta |
20217373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 20216870 - 20216985
Alignment:
| Q |
64 |
tcatgcagtggacaagctgaaaaagaatttcgagtggaagttgaggctattggtcatgtgaggcacaagaatttggttagacttttgggtttttgcattg |
163 |
Q |
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| T |
20216870 |
tcatgcagaggacaagctgaaaaggaatttagggtggaagttgaggctattggtcatgtgcggcataagaacttggttcggcttttgggtttttgcatcg |
20216969 |
T |
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| Q |
164 |
aaggcactcacaggta |
179 |
Q |
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| T |
20216970 |
aaggcactcacaggta |
20216985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 734 - 805
Target Start/End: Original strand, 20217491 - 20217562
Alignment:
| Q |
734 |
ggcttacttgcacgaggcaattgagccgaaagttgtccatcgagatatcaagtcaagtaatattcttattga |
805 |
Q |
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| T |
20217491 |
ggcttacttgcacgaggcaattgagccaaaagttgtacatcgagatattaagtcgagcaatattctaattga |
20217562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 517 - 631
Target Start/End: Original strand, 45859976 - 45860090
Alignment:
| Q |
517 |
tatgagtatgttaataatggaaacttggagcaatggcttcatggtgccatgcggcaatatggttatcttacatgggatgcccggattaaaattcttcttg |
616 |
Q |
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| T |
45859976 |
tatgagtatgtcaataatggaaacttagagcaatggcttcatggagccatgcgtcaccatggctatcttacgtgggaagcacgcatcaagattctccttg |
45860075 |
T |
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| Q |
617 |
gaacagccaaagcgt |
631 |
Q |
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| T |
45860076 |
gcacagccaaagcgt |
45860090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 45859716 - 45859819
Alignment:
| Q |
76 |
caagctgaaaaagaatttcgagtggaagttgaggctattggtcatgtgaggcacaagaatttggttagacttttgggtttttgcattgaaggcactcaca |
175 |
Q |
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| T |
45859716 |
caagcagagaaagaatttagagtggaagttgaagctattggtcatgtcagacacaaaaacttggttcgacttttggggttctgcgtcgagggaactcaca |
45859815 |
T |
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| Q |
176 |
ggta |
179 |
Q |
| |
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|||| |
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| T |
45859816 |
ggta |
45859819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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