View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15605_high_24 (Length: 340)

Name: NF15605_high_24
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15605_high_24
NF15605_high_24
[»] chr4 (5 HSPs)
chr4 (42-323)||(48912127-48912408)
chr4 (46-280)||(48958264-48958498)
chr4 (39-325)||(48965442-48965725)
chr4 (46-200)||(48961413-48961567)
chr4 (94-221)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (46-323)||(6293-6570)
scaffold0536 (42-323)||(10277-10556)
[»] chr6 (2 HSPs)
chr6 (46-317)||(12589957-12590231)
chr6 (92-323)||(12483246-12483477)
[»] chr2 (3 HSPs)
chr2 (92-279)||(13440363-13440550)
chr2 (42-241)||(13448479-13448675)
chr2 (95-182)||(13455000-13455087)
[»] chr7 (1 HSPs)
chr7 (78-301)||(3417334-3417557)
[»] chr5 (2 HSPs)
chr5 (78-279)||(28385483-28385684)
chr5 (92-284)||(12540848-12541040)
[»] chr8 (1 HSPs)
chr8 (92-233)||(12641353-12641494)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 42 - 323
Target Start/End: Complemental strand, 48912408 - 48912127
Alignment:
Q  42 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912408 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 48912309  T
Q  142 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 241  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912308 tcattctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 48912209  T
Q  242 gacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 323  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912208 gacattggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 48912127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 48958264 - 48958498
Alignment:
Q  46 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 145  Q
    ||||| ||||| ||| |||| |||| | | ||||||||||| ||  |||||||||| || || || |||||||| ||| |||||||||||||| | || |    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgt 48958363  T
Q  146 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgaca 245  Q
      ||  ||| |||||| ||||||||||||||||  ||||||||||  |||||||| ||||| |||||||||||||||||||||||||| || |||| |||    
T  48958364 cttctttccctttcttctcaggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataaca 48958463  T
Q  246 tcggcttccaaagcatatgtacaccaccgagttat 280  Q
    |  |||||||||||||||||||| ||| |||||||    
T  48958464 tatgcttccaaagcatatgtacaacactgagttat 48958498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 325
Target Start/End: Original strand, 48965442 - 48965725
Alignment:
Q  39 cagaacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttca 138  Q
    ||||||||| |||||||||||| ||||||||| | |||||||   ||| ||  |||||||||| || |||||||| ||||| ||||  ||||||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctt---tccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttca 48965538  T
Q  139 ttgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaa 238  Q
     | |||| |||  |||  || ||    |||| ||||||||| || || |||| ||||||||| ||  | ||||||||||||||||| |||||||||  |     
T  48965539 ctctcatcctctttcccgttattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgat 48965638  T
Q  239 aatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcactg 325  Q
    || ||||  |||||||||||| |||||||| ||| ||||||| | | || || || ||||||||||||||||| ||||| |||||||    
T  48965639 aacgacagaggcttccaaagcttatgtacaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcactg 48965725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 48961413 - 48961567
Alignment:
Q  46 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 145  Q
    ||||| ||||| |||||||| |||| | ||||||||||| | ||  ||||||||||||| || || |||||||| || ||||||||||||||  | ||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcat 48961512  T
Q  146 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttc 200  Q
     | |  ||| ||| || ||||||||||||||||  |||||||||| |||||||||    
T  48961513 ccactttcccttttttctcaggaacaacccatacaaattcgtgacccgatgcttc 48961567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 48951399 - 48951526
Alignment:
Q  94 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 193  Q
    |||||||||||| || | || ||||||||||| |||||||| ||| | || | |||| |||  |||||||| || ||||||||||||||||| | ||  |    
T  48951399 ctctcttcaaactccctgggtaaccatttttccttctcctcatcactctcgttctccttccccttcttttctgggacaacccatatgaattcataacctg 48951498  T
Q  194 atgcttcaatcccgcacgcaatctcata 221  Q
    || |||| ||| |||  |||||||||||    
T  48951499 attcttctatcgcgcttgcaatctcata 48951526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 46 - 323
Target Start/End: Complemental strand, 6570 - 6293
Alignment:
Q  46 tgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcat 145  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||| | ||||    
T  6570 tgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcat 6471  T
Q  146 gctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgaca 245  Q
      ||  ||| |||||| |||||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | ||    
T  6470 cttctttccctttcttctcaggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggca 6371  T
Q  246 tcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 323  Q
    |  |||||||||||||||||||| ||| ||||||||| | |||||||  |||||||||| |||||| |||||||||||    
T  6370 taagcttccaaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcac 6293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 42 - 323
Target Start/End: Complemental strand, 10556 - 10277
Alignment:
Q  42 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 141  Q
    |||||| || ||||||||||||||||||| | ||||||||||| | |||| ||| |||||||| || || || | |||||||||||||||||||| | |     
T  10556 aacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagccatttttctttctcctcttgactc 10457  T
Q  142 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 241  Q
    |||| |||  ||| |||||| ||||||||||| ||||  ||||||| || ||||||||| | || ||||||||||||||||||||||||||| |||||||    
T  10456 tcattctctttccctttcttctcaggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaat 10357  T
Q  242 gacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcac 323  Q
     |||| ||||||||||||| ||||||| ||| ||  ||||| | ||| ||||||||||||||| |||||| |||||||||||    
T  10356 aacataggcttccaaagcaaatgtacaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcac 10277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 46 - 317
Target Start/End: Complemental strand, 12590231 - 12589957
Alignment:
Q  46 tgtggagcccaacccttaataatcatagccttcttctttc---cgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgt 142  Q
    ||||| ||||||||| |||| |||| | ||||||||||||   | ||  ||||||||||||| ||  | ||||||||||||| ||| ||||| ||| | |    
T  12590231 tgtggggcccaacccctaatgatcaaacccttcttctttctcccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactct 12590132  T
Q  143 catgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatg 242  Q
    |||  ||| ||| ||| || || |||| |||||||| ||||||||| |  |||||||| || || |||| ||||||||||||||||||||| || ||||     
T  12590131 catcttccttcccttttttctcgggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaata 12590032  T
Q  243 acatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcac 317  Q
     |||  ||| |||||||||||||||| ||| ||||||||| | |||||||| |||||||||| |||||| |||||    
T  12590031 gcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgagtttagccaactcagacactcttgcac 12589957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 323
Target Start/End: Complemental strand, 12483477 - 12483246
Alignment:
Q  92 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 191  Q
    ||||||| ||||| ||||| |||||||| |||||||||||||| ||  | ||||  ||| ||| ||| || ||||||||||||||||||||||  | ||     
T  12483477 ttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaattttttacc 12483378  T
Q  192 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 291  Q
    ||||||||| || ||||| | ||| || ||||| |||||||| || ||||  ||| |||| |||||||||||||||| ||| || || ||||| || |||    
T  12483377 cgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgctttgag 12483278  T
Q  292 ttaagccaactcaaacactcgtgcacactcac 323  Q
    || ||||||||   |||||| ||||| |||||    
T  12483277 tttagccaactttgacactcatgcacgctcac 12483246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 279
Target Start/End: Original strand, 13440363 - 13440550
Alignment:
Q  92 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 191  Q
    |||||||||| || |||||||||||||| ||||||||||| || ||| | ||||  ||  ||| |||||| |||||||||||||||||||||  ||||||    
T  13440363 ttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccatatgaatgggtgact 13440462  T
Q  192 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagtta 279  Q
     |||||||| ||  ||||||| |||||||| ||||||||||| || ||||       ||||||||| |||||||||| ||||||||||    
T  13440463 agatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagtta 13440550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 13448479 - 13448675
Alignment:
Q  42 aacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattg 141  Q
    ||||||||| ||||||||| |||| |||| | ||||||||   |||||| ||||||||||||| ||||| || ||||| ||||||||||| |||||  |     
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctc 13448575  T
Q  142 tcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 241  Q
    ||||  ||  ||| |||||| |||||||||||||||||||||  |||||  |||||||| ||| | || || ||||| || ||||||||||| |||||||    
T  13448576 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 13448675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 13455000 - 13455087
Alignment:
Q  95 tctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 182  Q
    |||||||||| ||||| |||||||| |||| ||||||||||||  | ||||  ||  ||| |||||| || |||||||||||||||||    
T  13455000 tctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctccggaacaacccatatgaa 13455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 301
Target Start/End: Complemental strand, 3417557 - 3417334
Alignment:
Q  78 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 177  Q
    ||||||||| ||  ||||||| ||||| ||||| |||||||| ||||||||||| ||||| || ||||  ||  | | |||||| ||| |||||||||||    
T  3417557 cttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctcaagaacaacccat 3417458  T
Q  178 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 277  Q
    ||||||  ||||| ||||||||| ||  || | ||||||||||| ||||||||||| || ||||    |  ||||||||| |||||||||| ||| ||||    
T  3417457 atgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagt 3417358  T
Q  278 tatcttgtttcgagttaagccaac 301  Q
    || ||||||  ||||| |||||||    
T  3417357 taacttgttgtgagttgagccaac 3417334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 279
Target Start/End: Original strand, 28385483 - 28385684
Alignment:
Q  78 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 177  Q
    ||||||||| ||  ||||||| ||||| |||||||||| ||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||    
T  28385483 cttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctcaggaacaacccat 28385582  T
Q  178 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 277  Q
    ||||||  |||||  |||||||| |   |||| ||||||||||| ||||||||||| || |||||   |  ||||||||| ||||||||||| || ||||    
T  28385583 atgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagt 28385682  T
Q  278 ta 279  Q
    ||    
T  28385683 ta 28385684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 284
Target Start/End: Original strand, 12540848 - 12541040
Alignment:
Q  92 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 191  Q
    ||||||| ||||| ||||| |||| ||| ||||||||||| |||||| | ||||  ||  ||| | |||| |||||||||||||||||||||  |||||     
T  12540848 ttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccctctcttctcaggaacaacccatatgaatgggtgacc 12540947  T
Q  192 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttg 284  Q
    |  | |||| |   | || ||||||||||| |||||||| ||  | ||||||  |  ||||||||| |||||||||||||| |||||| ||||    
T  12540948 cattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttg 12541040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 12641494 - 12641353
Alignment:
Q  92 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 191  Q
    |||||||||| || || || |||||||| |||||||||||||||||| | ||||  |   ||| |||||| ||||||||||||||||  ||||||||||     
T  12641494 ttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacc 12641395  T
Q  192 cgatgcttcaatcccgcacgcaatctcataaagttgtttatc 233  Q
     ||   ||| || |||| ||||||||| ||||||||||||||    
T  12641394 tgaattttctattccgctcgcaatctcgtaaagttgtttatc 12641353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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