View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15605_high_29 (Length: 334)
Name: NF15605_high_29
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_29 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 334
Target Start/End: Original strand, 13879376 - 13879689
Alignment:
| Q |
21 |
gacatcatcatcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaactgttctctatcattttggctttagtgttaaca |
120 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13879376 |
gacatcatcatcttcatcttcgtcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaaca |
13879475 |
T |
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| Q |
121 |
aagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879476 |
aagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacat |
13879575 |
T |
|
| Q |
221 |
caatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13879576 |
caatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
13879675 |
T |
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| Q |
321 |
gttgttgttgttgt |
334 |
Q |
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| T |
13879676 |
atcgttgttgttgt |
13879689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 13875167 - 13875461
Alignment:
| Q |
29 |
catcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaactgttctctatcattttggctttagtgttaacaaagtcgca |
128 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||| | |
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| T |
13875167 |
catcatcatcttcatcttcttccttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaa |
13875266 |
T |
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| Q |
129 |
gtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctct |
228 |
Q |
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|||||||||||||||| ||||| ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13875267 |
atgcttccctttcaagtcgagtgtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctct |
13875366 |
T |
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| Q |
229 |
tccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgtt |
323 |
Q |
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|||||||||||||||| ||||| |||||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||| || |||||||| |
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| T |
13875367 |
tccttcctcacgttgttggcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagataatagtcatcgtt |
13875461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 4879 - 4851
Alignment:
| Q |
25 |
tcatcatcttcatcttcatcttcttcctt |
53 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4879 |
tcatcatcttcatcttcatcttcttcctt |
4851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 42827129 - 42827157
Alignment:
| Q |
25 |
tcatcatcttcatcttcatcttcttcctt |
53 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42827129 |
tcatcatcttcatcttcatcttcttcctt |
42827157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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