View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15605_high_3 (Length: 461)

Name: NF15605_high_3
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15605_high_3
NF15605_high_3
[»] chr8 (11 HSPs)
chr8 (90-439)||(9624198-9624565)
chr8 (128-277)||(22756346-22756498)
chr8 (129-253)||(54189-54315)
chr8 (128-286)||(16595076-16595236)
chr8 (128-277)||(15001484-15001636)
chr8 (158-286)||(29610981-29611112)
chr8 (201-277)||(7591382-7591459)
chr8 (128-277)||(10932754-10932905)
chr8 (201-277)||(30501238-30501315)
chr8 (128-277)||(35225680-35225832)
chr8 (201-277)||(41548711-41548788)
[»] chr7 (2 HSPs)
chr7 (128-286)||(21408539-21408699)
chr7 (201-277)||(1363733-1363810)
[»] chr5 (4 HSPs)
chr5 (128-286)||(4689615-4689776)
chr5 (128-286)||(27838991-27839151)
chr5 (223-283)||(14011173-14011233)
chr5 (201-280)||(26180217-26180297)
[»] chr3 (4 HSPs)
chr3 (137-277)||(19906790-19906933)
chr3 (201-277)||(41682967-41683044)
chr3 (201-277)||(3867563-3867640)
chr3 (201-277)||(50386370-50386447)
[»] chr1 (8 HSPs)
chr1 (128-283)||(26733582-26733740)
chr1 (201-277)||(42512765-42512842)
chr1 (218-286)||(47242502-47242571)
chr1 (231-283)||(7146892-7146945)
chr1 (201-277)||(7837235-7837312)
chr1 (201-286)||(31574456-31574541)
chr1 (128-253)||(17887975-17888102)
chr1 (128-253)||(41967869-41967996)
[»] chr4 (10 HSPs)
chr4 (128-170)||(40792438-40792480)
chr4 (201-277)||(26083435-26083512)
chr4 (201-277)||(50178405-50178482)
chr4 (201-277)||(50729455-50729532)
chr4 (223-283)||(9807273-9807334)
chr4 (201-277)||(11056138-11056215)
chr4 (201-269)||(20517943-20518012)
chr4 (201-269)||(36497313-36497382)
chr4 (201-277)||(44640419-44640496)
chr4 (137-181)||(7554969-7555013)
[»] scaffold0025 (1 HSPs)
scaffold0025 (201-277)||(5365-5442)
[»] chr2 (4 HSPs)
chr2 (223-286)||(83385-83449)
chr2 (208-277)||(6896268-6896338)
chr2 (137-286)||(44284656-44284808)
chr2 (223-286)||(38623215-38623279)
[»] chr6 (7 HSPs)
chr6 (201-275)||(9614067-9614142)
chr6 (158-277)||(18597117-18597239)
chr6 (128-181)||(7396183-7396236)
chr6 (201-277)||(10485250-10485327)
chr6 (239-283)||(14925170-14925215)
chr6 (223-283)||(14925409-14925470)
chr6 (201-280)||(35004084-35004164)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 90 - 439
Target Start/End: Original strand, 9624198 - 9624565
Alignment:
Q  90 tttttatggtattgaataannnnnnngtcttatacaatttt-ttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggt 188  Q
    |||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9624198 tttttatggtattgaataatttttttgtcttatacaatttttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttgtggtttagcaagggt 9624297  T
Q  189 cgaaaatttatgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaacaaacagtgtacaactgaagttgtcatgtcatgcc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  9624298 cgaaaatttatgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaataaacagtgtacaactgaagttgtcatgtcatgtc 9624397  T
Q  289 atgttcttcannnnnnnagcagatcaaacgcacctaattgtatcat-------atttgacttatctcaaataattcatctttctctcaatttgttttctt 381  Q
    ||||||||||       |||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||    
T  9624398 atgttcttcatttttttagcagatcaaacgcacctaattgtatcatatttttcatttgacttatctcaaatgattcatctttctctcaatttgttttctt 9624497  T
Q  382 ----------tcaatcgtgctttttaacatgatatagagttagaccgtttatttttctatctgatgat 439  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9624498 ttagttgggctcaatcgtgctttttaacatgatatagagttagaccgtttatttttctatcttatgat 9624565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 277
Target Start/End: Complemental strand, 22756498 - 22756346
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtt 225  Q
    |||||||| |||||||||||||| | ||| ||||||||||||||| |||| ||   ||||   ||||||||||  |||||| ||||||||| |||   ||    
T  22756498 tttttgtattttagataacttgtacgtgatacaaaaagttgtgttgtggtataatgagggataaaaatttatgtttttgtcttgtctcttgcctcaaatt 22756399  T
Q  226 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||| | ||||||||||| ||||||||| |||||| |||| ||||| ||||||    
T  22756398 tgtcctatcccagaaacagttttacaaatcaaacattgtataactggagttgt 22756346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 54189 - 54315
Alignment:
Q  129 ttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgttt 226  Q
    ||||||| ||| ||||||||||   ||  ||||||||||||| | ||||||||||| || | ||||||||||  ||||||||||| ||||| ||| | ||    
T  54189 ttttgtattttcgataacttgtatgtgggacaaaaagttgtgatgtggtttagcaaaggacaaaaatttatgtttttgtcatgtcccttgtgtccggatt 54288  T
Q  227 gtcttgtcccagaaacaattttacaaa 253  Q
    ||| |||| |||||||| |||||||||    
T  54289 gtcatgtctcagaaacagttttacaaa 54315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 286
Target Start/End: Complemental strand, 16595236 - 16595076
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtt 225  Q
    |||||||| |||||||||||||| | ||  ||||||||||||||| ||| ||||| |||| | ||| || |||  |||||| |||| |||| || | |||    
T  16595236 tttttgtattttagataacttgtacgtgggacaaaaagttgtgttgtggattagcgagggacaaaacttcatgtttttgtcctgtcccttgcctacagtt 16595137  T
Q  226 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 286  Q
    |||  |||||||||||||| |||||||| |||||| | ||||||||  |||||| |||||||    
T  16595136 tgttctgtcccagaaacaa-tttacaaatcaaacaatatacaactggtgttgtcctgtcatg 16595076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 15001484 - 15001636
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatgttt--gtcatgtctcttgtctcccgtt 225  Q
    |||| ||| |||||||||||||| | ||  ||||||||||||||| |||||| |  |||| | |||||||  ||||  ||  ||||| ||| |||| |||    
T  15001484 ttttggtattttagataacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgttctgtctattgcctccagtt 15001583  T
Q  226 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||| |||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  15001584 tgtcctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 15001636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 286
Target Start/End: Complemental strand, 29611112 - 29610981
Alignment:
Q  158 acaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 254  Q
    ||||||||||||||| |||||| || |||| | |||||||   | |||||| |||| |||| |||| ||||||  |||||| |||||| ||||||||| |    
T  29611112 acaaaaagttgtgttgtggtttggcgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatc 29611013  T
Q  255 aaacagtgtacaactgaagttgtcatgtcatg 286  Q
    ||||| || ||||||||||||||  |||||||    
T  29611012 aaacattggacaactgaagttgttctgtcatg 29610981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 7591459 - 7591382
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  7591459 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 7591382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 10932754 - 10932905
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattta-tgtttgtcatgtctcttgtctcccgttt 226  Q
    |||| ||| |||||| || |||| | || ||| |||||||||| | ||||||||  |||| | ||| |||| | ||| |||||||||||| |||   |||    
T  10932754 ttttggtattttagacaaattgtacgtggaactaaaagttgtgatgtggtttagtgagggacaaaattttagtttttatcatgtctcttgcctctacttt 10932853  T
Q  227 gtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    ||||||||||| ||||||||||| ||| ||||||   |||||||||||||||    
T  10932854 gtcttgtcccataaacaattttataaatcaaacaccatacaactgaagttgt 10932905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 30501238 - 30501315
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| |||| |||| |||| ||||||||||| || |||||| ||||||||| |||||| ||  |||||||||||||    
T  30501238 tttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgggcaactgaagttgt 30501315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 35225680 - 35225832
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatt--tatgtttgtcatgtctcttgtctcccgtt 225  Q
    |||||||| |||||| ||||||| | ||  ||||||||||||| | |||||| || |||| | ||||||    | |||||| |||| |||| |||| |||    
T  35225680 tttttgtattttagacaacttgtacttgtgacaaaaagttgtgatgtggtttggcgagggacaaaaattgcagtttttgtcctgtcccttgcctccagtt 35225779  T
Q  226 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||| |||||| |||||  ||||||||| |||||| || ||||||| ||||||    
T  35225780 tgtcctgtccctgaaactgttttacaaaccaaacactggacaactggagttgt 35225832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 41548711 - 41548788
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| ||||||||| |||| ||||||| |||  | |||||| ||||||||| |||||| || ||||||||||||||    
T  41548711 tttgtcctgtctcttgcctccagtttgtcatgtatctgaaacagttttacaaatcaaacactggacaactgaagttgt 41548788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 286
Target Start/End: Complemental strand, 21408699 - 21408539
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaa-aatttatgtttgtcatgtctcttgtctcccgttt 226  Q
    |||||||| |||||||||||||| ||||||| |||||||| |||| |||||||   |||| | ||   ||| | ||||||||||| |||| |||| ||||    
T  21408699 tttttgtattttagataacttgtacatgaaataaaaagttatgttgtggtttaatgagggacaaatgttttgtctttgtcatgtcccttgcctccagttt 21408600  T
Q  227 gtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 286  Q
    || |||||||| |||||  |||||||| |||| | |||||||||  || ||||||||||||    
T  21408599 gtgttgtcccaaaaacagctttacaaatcaaatattgtacaactagagatgtcatgtcatg 21408539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 1363733 - 1363810
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    ||||||||||| |||| |||| ||||||| ||| |  |||||||||||||||| |||||| || ||||||||||||||    
T  1363733 tttgtcatgtcccttgcctccagtttgtcctgtacatgaaacaattttacaaatcaaacactggacaactgaagttgt 1363810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 286
Target Start/End: Complemental strand, 4689776 - 4689615
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtt 225  Q
    |||||||| |||||  ||||||| | ||  ||||||||||||||| |||||| |  |||| | ||||| | ||  |||||| |||| |||| |||| |||    
T  4689776 tttttgtattttaggcaacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatatgtgtttttgtcctgtcccttgcctccagtt 4689677  T
Q  226 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 286  Q
    |||||||| || |||||| ||||||||| |||||| || ||||||||||||||  |||||||    
T  4689676 tgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgttctgtcatg 4689615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 286
Target Start/End: Complemental strand, 27839151 - 27838991
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatg-tttgtcatgtctcttgtctcccgttt 226  Q
    |||| ||| |||||| ||||||| ||||| |||||||||||| ||||||||| |  |||| | |||||||||| ||| || ||||  ||| || | ||||    
T  27839151 ttttggtattttagacaacttgtacatgagacaaaaagttgttttatggtttggtgagggacaaaaatttatgttttatcctgtccattgccttcagttt 27839052  T
Q  227 gtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 286  Q
    ||| ||| || |||||| ||||||||| |||||| || ||||||| ||||||  |||||||    
T  27839051 gtcatgtacctgaaacagttttacaaatcaaacactggacaactggagttgttctgtcatg 27838991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 14011233 - 14011173
Alignment:
Q  223 gtttgtcttgtcccagaaacaattttacaaacaaacagtgtacaactgaagttgtcatgtc 283  Q
    ||||||| ||||||  ||||||||| |||| ||||||  ||||||||||||||||| ||||    
T  14011233 gtttgtcatgtccctaaaacaatttcacaatcaaacatagtacaactgaagttgtcctgtc 14011173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 26180297 - 26180217
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcat 280  Q
    |||||||| ||| ||||||||  ||| || ||||||| ||||| ||||||||| |||| | |||| |||||||||||||||    
T  26180297 tttgtcatatcttttgtctccaatttatcatgtcccaaaaacagttttacaaatcaaatattgtataactgaagttgtcat 26180217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 19906790 - 19906933
Alignment:
Q  137 tttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtttgtcttgtc 234  Q
    |||||| ||||||| | ||| ||||||||||||| | |||||| |  |||| | |||||||   | |||||| |||| |||| |||| ||||||  ||||    
T  19906790 tttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtc 19906889  T
Q  235 ccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    || |||||||||||||||| |||||| || ||||||||||||||    
T  19906890 cctgaaacaattttacaaatcaaacactggacaactgaagttgt 19906933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 41683044 - 41682967
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  41683044 tttgtcttgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 41682967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 3867640 - 3867563
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    ||||||||||||||||||||| || |||  |||||| |||||| ||||||||| ||||||  | ||||||| ||||||    
T  3867640 tttgtcatgtctcttgtctccagtatgttctgtccctgaaacagttttacaaatcaaacaccggacaactggagttgt 3867563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 50386447 - 50386370
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||||||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| |  ||||||| ||||||    
T  50386447 tttgtcatgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactagacaactggagttgt 50386370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 283
Target Start/End: Original strand, 26733582 - 26733740
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtt 225  Q
    |||| ||| |||||| ||||||| |||||  |||||||||||||||||||||||   ||| | | |||||   | |||||||||||  | |||||  |||    
T  26733582 ttttggtattttagacaacttgtacatgaggcaaaaagttgtgttatggtttagtgggggacaagaatttcagtttttgtcatgtccatcgtctctagtt 26733681  T
Q  226 tgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 283  Q
    ||||  |||| | ||||| ||||||||| ||||||  ||||||||||||||||||||||    
T  26733682 tgtccggtcctaaaaacagttttacaaatcaaacatcgtacaactgaagttgtcatgtc 26733740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 42512842 - 42512765
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  42512842 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 42512765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 47242571 - 47242502
Alignment:
Q  218 ctcccgtttgtcttgtcccagaaacaattttacaaac-aaacagtgtacaactgaagttgtcatgtcatg 286  Q
    |||| ||||||| ||||||| |||||||||||||||  |||||   ||||||||||||||||||||||||    
T  47242571 ctccagtttgtcatgtcccataaacaattttacaaattaaacaccatacaactgaagttgtcatgtcatg 47242502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 7146892 - 7146945
Alignment:
Q  231 tgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 283  Q
    ||||||| ||||||||||||||| |||||| | ||||||||||||||| |||||    
T  7146892 tgtcccaaaaacaattttacaaatcaaacactatacaactgaagttgttatgtc 7146945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 7837235 - 7837312
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    ||||||||||| |||| |||  ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  7837235 tttgtcatgtcccttgcctctagtttgtcatgttcctgaaacagttttacaaatcaaacactgaacaactgaagttgt 7837312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 31574456 - 31574541
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaacaaacagtgtacaactgaagttgtcatgtcatg 286  Q
    |||||||||| |||| ||||| |||||| ||||    |||| | |||||||||  || | ||||||||||||||||||||||||||    
T  31574456 tttgtcatgtttcttatctccagtttgttttgtttttgaaatagttttacaaatcaaaattgtacaactgaagttgtcatgtcatg 31574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 17887975 - 17888102
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtt 225  Q
    |||| ||| |||||| ||||||| | ||  ||||||||||||||| |||||| || |||| | ||||| |   | |||||| |||| |||| |||| |||    
T  17887975 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggcgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 17888074  T
Q  226 tgtcttgtcccagaaacaattttacaaa 253  Q
    |||||||| || |||||| |||||||||    
T  17888075 tgtcttgtacctgaaacagttttacaaa 17888102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 253
Target Start/End: Complemental strand, 41967996 - 41967869
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtt 225  Q
    |||| ||| |||||| ||||||| | ||| ||||||||||||||| |||||| | ||||| | ||||| |   | |||||| ||||||||| |||  |||    
T  41967996 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgttgtggtttggtaagggacaaaaatatgagtttttgtcttgtctcttgcctctagtt 41967897  T
Q  226 tgtcttgtcccagaaacaattttacaaa 253  Q
    |||| ||| || |||||| |||||||||    
T  41967896 tgtcctgtacctgaaacagttttacaaa 41967869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 40792438 - 40792480
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtg 170  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  40792438 tttttgtattttagataacttgtacatgaaacaaaaagttgtg 40792480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 26083435 - 26083512
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    ||||||||||| |||| |||| ||||||  |||||| |||||||||||||||| |||||| |  ||||||||||||||    
T  26083435 tttgtcatgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaacactaaacaactgaagttgt 26083512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 50178482 - 50178405
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  50178482 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 50178405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 50729532 - 50729455
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    ||||||||||| |||| |||| ||||||  |||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  50729532 tttgtcatgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 50729455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 9807273 - 9807334
Alignment:
Q  223 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 283  Q
    ||||||||||| || |||||| ||||||||| |||||| || ||||||||||||||| ||||    
T  9807273 gtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtcctgtc 9807334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 11056138 - 11056215
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| |||| |||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  11056138 tttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 11056215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 20518012 - 20517943
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaact 269  Q
    |||||| ||||||||| |||| ||||||||||| || |||||| ||||||||| |||||| || ||||||    
T  20518012 tttgtcctgtctcttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgaacaact 20517943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 36497313 - 36497382
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaact 269  Q
    |||||| |||||||||||||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||    
T  36497313 tttgtcctgtctcttgtctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaact 36497382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 44640419 - 44640496
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| ||||||||| |||  ||||||| | | ||| ||||| ||||||||| |||||| |||||||||||||||||    
T  44640419 tttgtcttgtctcttgcctctagtttgtcattttccataaacagttttacaaatcaaacactgtacaactgaagttgt 44640496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 7555013 - 7554969
Alignment:
Q  137 tttagataacttgtgcatgaaacaaaaagttgtgttatggtttag 181  Q
    |||||| ||||||| | ||| ||||||||||||||||||||||||    
T  7555013 tttagacaacttgtacgtgagacaaaaagttgtgttatggtttag 7554969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 5442 - 5365
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| |||| |||| |||| ||||||||||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  5442 tttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 5365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 83385 - 83449
Alignment:
Q  223 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 286  Q
    ||||||| ||||||| ||||| ||||||||| |||||| ||| |||||||||||||| |||||||    
T  83385 gtttgtcatgtcccacaaacagttttacaaatcaaacactgtgcaactgaagttgtcttgtcatg 83449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 6896268 - 6896338
Alignment:
Q  208 tgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||| |||| |||| |||||| ||||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  6896268 tgtcccttgcctccagtttgttttgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 6896338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 44284656 - 44284808
Alignment:
Q  137 tttagataacttgtgcatgaaacaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtttgtcttgtc 234  Q
    |||||| ||||||| | ||| ||||||||||||| | ||||||||  |||| | ||||| |   | |||||| |||| |||| |||| |||||||||||     
T  44284656 tttagacaacttgtacgtgagacaaaaagttgtgctgtggtttagtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcttgta 44284755  T
Q  235 ccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 286  Q
    || |||||| ||||||||| |||||| || ||||||  ||||||  |||||||    
T  44284756 cctgaaacagttttacaaatcaaacactgaacaactctagttgttctgtcatg 44284808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 38623279 - 38623215
Alignment:
Q  223 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 286  Q
    ||||||| |||||| |||||| ||||||||| |||||| || | |||||||||||| ||||||||    
T  38623279 gtttgtcctgtccctgaaacagttttacaaatcaaacattggataactgaagttgttatgtcatg 38623215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 9614067 - 9614142
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagtt 275  Q
    ||||||||||| |||| |||| |||| || |||||  |||||| ||||||||| |||||| |||||||||||||||    
T  9614067 tttgtcatgtcccttgcctccagtttatcctgtccttgaaacagttttacaaatcaaacattgtacaactgaagtt 9614142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 277
Target Start/End: Complemental strand, 18597239 - 18597117
Alignment:
Q  158 acaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 254  Q
    ||||||||||||||| |||||| |  |||| | |||||||  |  ||||||||||| |||| |||| ||||||| | |||| |||||| ||||||||| |    
T  18597239 acaaaaagttgtgttgtggtttggtgagggacaaaaatttcagattttgtcatgtcccttgcctccggtttgtcatatccctgaaacagttttacaaatc 18597140  T
Q  255 aaacagtgtacaactgaagttgt 277  Q
    ||||| || ||||||||| ||||    
T  18597139 aaacactgaacaactgaaattgt 18597117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 7396236 - 7396183
Alignment:
Q  128 tttttgtaatttagataacttgtgcatgaaacaaaaagttgtgttatggtttag 181  Q
    |||||||| |||||||||||||| | ||| ||||||||||||||  ||||||||    
T  7396236 tttttgtattttagataacttgtacgtgagacaaaaagttgtgtagtggtttag 7396183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 10485250 - 10485327
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 277  Q
    |||||| ||||||||| |||| ||||||| ||| || |||| ||||||||||| |||||| || ||||||| ||||||    
T  10485250 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaataattttacaaatcaaacactggacaactggagttgt 10485327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 14925215 - 14925170
Alignment:
Q  239 aaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 283  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||    
T  14925215 aaacaattttacaaatcaaacactggacaactgaagttgtcatgtc 14925170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 14925470 - 14925409
Alignment:
Q  223 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 283  Q
    ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||||||||    
T  14925470 gtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtcatgtc 14925409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 35004164 - 35004084
Alignment:
Q  201 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcat 280  Q
    |||||| |||||||||||||| |||| |||||||| | ||||  ||||||||| ||||||  | ||||||| |||||||||    
T  35004164 tttgtcttgtctcttgtctccggtttatcttgtcctataaaccgttttacaaatcaaacaccgcacaactggagttgtcat 35004084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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