View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15605_high_30 (Length: 334)
Name: NF15605_high_30
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15605_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 1963211 - 1962905
Alignment:
| Q |
1 |
ccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
1963211 |
ccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggacccttttcaattt |
1963112 |
T |
|
| Q |
101 |
ccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacactggagaaagaacttgtaagattgacttgatctatcttgagctaggtc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963111 |
ccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtc |
1963012 |
T |
|
| Q |
201 |
aag-aaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaa |
299 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963011 |
aagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaa |
1962912 |
T |
|
| Q |
300 |
tggaagt |
306 |
Q |
| |
|
||||||| |
|
|
| T |
1962911 |
tggaagt |
1962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 2015218 - 2015524
Alignment:
| Q |
1 |
ccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
2015218 |
ccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctataggaccgttttcgattt |
2015317 |
T |
|
| Q |
101 |
ccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacactggagaaagaacttgtaagattgacttgatctatcttgagctaggtc |
200 |
Q |
| |
|
| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| ||||| ||| | |||||||||||||| ||||||||||||||||| || |
|
|
| T |
2015318 |
ctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactggatctatcttgagctagctc |
2015417 |
T |
|
| Q |
201 |
aagaa-atcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaa |
299 |
Q |
| |
|
|| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
2015418 |
aaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttatctaacttgagcaaa |
2015517 |
T |
|
| Q |
300 |
tggaagt |
306 |
Q |
| |
|
| ||||| |
|
|
| T |
2015518 |
tagaagt |
2015524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 2018616 - 2018907
Alignment:
| Q |
16 |
gtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaa |
115 |
Q |
| |
|
||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | ||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2018616 |
gtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctataggacctttttcaatttctaggaagctattaa |
2018715 |
T |
|
| Q |
116 |
ttagaacaccatcaaaaagacggaatttttcaacacactggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaa-atcccgacc |
214 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||| |||||| || |||| |||| |
|
|
| T |
2018716 |
taagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctatcttgagcttggtcaacaagatcctgacc |
2018815 |
T |
|
| Q |
215 |
atgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagt |
306 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
2018816 |
atgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttattcaacttgagcaaatagaagt |
2018907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 2433093 - 2432951
Alignment:
| Q |
8 |
ttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaa |
107 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||||||| ||||||| ||||| |||||||||| |||| ||||| | ||| |
|
|
| T |
2433093 |
ttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttctaagaa |
2432994 |
T |
|
| Q |
108 |
gctattaattagaacaccatcaaaaagacggaatttttcaaca |
150 |
Q |
| |
|
|||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2432993 |
gctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 2011827 - 2012124
Alignment:
| Q |
9 |
tgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaag |
108 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| ||| |||| ||||| | |||| |
|
|
| T |
2011827 |
tgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtcccatttccatttctaagaag |
2011926 |
T |
|
| Q |
109 |
ctattaattagaacaccatcaaaaagacggaatttttcaacacactggagaaagaacttgtaagattgacttgatctatcttgagcta-ggtcaagaaat |
207 |
Q |
| |
|
||||||| |||||||||||| || || || ||| |||| || || ||| | ||||||| ||||||||||||||||||| ||| |||||||| || |
|
|
| T |
2011927 |
ctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatcttgaactatggtcaagagat |
2012026 |
T |
|
| Q |
208 |
cccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
305 |
Q |
| |
|
||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
2012027 |
ccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
2012124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 2008204 - 2008509
Alignment:
| Q |
1 |
ccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaattt |
100 |
Q |
| |
|
|||||| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || ||||||| | || |||| |
|
|
| T |
2008204 |
ccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccatctctattt |
2008303 |
T |
|
| Q |
101 |
ccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacactggagaaagaacttgtaagattgacttgatctatcttgagctagg-t |
199 |
Q |
| |
|
| ||||||||||||| |||||||||||| | || || || |||| | |||| ||| ||||||| ||||||||||||||||||||||| | | |
|
|
| T |
2008304 |
ctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatcttgagctatgct |
2008403 |
T |
|
| Q |
200 |
caagaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaa |
299 |
Q |
| |
|
||||||||||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||||| ||||| ||| ||||| |
|
|
| T |
2008404 |
caagaaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccagcttaggcaaa |
2008503 |
T |
|
| Q |
300 |
tggaag |
305 |
Q |
| |
|
| |||| |
|
|
| T |
2008504 |
tagaag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 2004843 - 2004952
Alignment:
| Q |
20 |
ggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattag |
119 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| | || ||||| ||||||||||||| || |
|
|
| T |
2004843 |
ggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaag |
2004942 |
T |
|
| Q |
120 |
aacaccatca |
129 |
Q |
| |
|
|||||||||| |
|
|
| T |
2004943 |
aacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 288
Target Start/End: Complemental strand, 1968638 - 1968523
Alignment:
| Q |
174 |
ttgacttgatctatcttgagctagg-tcaagaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacat |
272 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||| |
|
|
| T |
1968638 |
ttgacttgatctatcttgagctacgctcaagagatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacat |
1968539 |
T |
|
| Q |
273 |
gaagtttccttatcca |
288 |
Q |
| |
|
|| ||||||| ||||| |
|
|
| T |
1968538 |
gatgtttcctcatcca |
1968523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 1964851 - 1964747
Alignment:
| Q |
25 |
atgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacac |
124 |
Q |
| |
|
||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |||| ||||| | ||||||||||| ||||||| |
|
|
| T |
1964851 |
atgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacac |
1964752 |
T |
|
| Q |
125 |
catca |
129 |
Q |
| |
|
||||| |
|
|
| T |
1964751 |
catca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
166 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgt |
264 |
Q |
| |
|
||||||| ||||||||| |||||||||| | || ||| || ||||| ||||| || || |||||||||||||||| |||||| |||| | ||||| | |
|
|
| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgagatccctgccatggattggtacacaacctggtatttttataggcactggtatatctccat |
2005088 |
T |
|
| Q |
265 |
actcacatgaagtttccttatccaacttgagcaaatggaag |
305 |
Q |
| |
|
|||||||||| ||||| | ||||||||| |||||| |||| |
|
|
| T |
2005089 |
actcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 1968797 - 1968683
Alignment:
| Q |
15 |
tgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctatta |
114 |
Q |
| |
|
|||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| ||| | || | |||||||||||||||| |
|
|
| T |
1968797 |
tgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtcccatctccaattccaggaagctatta |
1968698 |
T |
|
| Q |
115 |
attagaacaccatca |
129 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
1968697 |
acaaaaacaccatca |
1968683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 5902376 - 5902084
Alignment:
| Q |
15 |
tgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctatta |
114 |
Q |
| |
|
|||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5902376 |
tgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctttttcaatttccaggaagctatta |
5902277 |
T |
|
| Q |
115 |
attagaacaccatcaaaaagacggaatttttcaacacactggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaa-gaaatcccgac |
213 |
Q |
| |
|
|| || | ||||||| | || |||| ||| || || ||||| ||||| ||||||||||| || ||||||||||||||| || ||| || |||||||| |
|
|
| T |
5902276 |
ataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatcttgagcttgggcaacgagatcccgac |
5902177 |
T |
|
| Q |
214 |
catgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagt |
306 |
Q |
| |
|
|| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
5902176 |
cacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatccaatttgagcaaatagaagt |
5902084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
244 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
305 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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