View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15605_high_35 (Length: 322)

Name: NF15605_high_35
Description: NF15605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15605_high_35
NF15605_high_35
[»] chr7 (6 HSPs)
chr7 (1-307)||(18395911-18396226)
chr7 (48-107)||(27073633-27073692)
chr7 (48-107)||(27204621-27204680)
chr7 (11-60)||(23565313-23565363)
chr7 (14-94)||(36146678-36146759)
chr7 (1-100)||(40808415-40808516)
[»] chr8 (7 HSPs)
chr8 (1-115)||(11712245-11712361)
chr8 (13-94)||(32902442-32902524)
chr8 (13-91)||(29796578-29796656)
chr8 (65-115)||(8153572-8153622)
chr8 (38-91)||(3232092-3232145)
chr8 (38-115)||(8863333-8863409)
chr8 (39-87)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (1-115)||(4560904-4561020)
chr2 (38-82)||(28671797-28671841)
chr2 (13-87)||(36773387-36773462)
chr2 (1-83)||(11067134-11067218)
[»] scaffold0129 (1 HSPs)
scaffold0129 (14-94)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (1-87)||(6677306-6677393)
chr4 (38-153)||(21704109-21704225)
chr4 (38-153)||(3739397-3739511)
chr4 (13-94)||(36463657-36463738)
chr4 (48-91)||(4587792-4587835)
chr4 (60-93)||(43208174-43208207)
[»] chr1 (4 HSPs)
chr1 (13-87)||(8871315-8871390)
chr1 (43-99)||(2263271-2263327)
chr1 (13-89)||(28265821-28265898)
chr1 (65-113)||(25116407-25116455)
[»] chr5 (1 HSPs)
chr5 (38-112)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (38-112)||(21156738-21156811)
chr3 (38-91)||(40519479-40519532)
chr3 (38-91)||(2075350-2075403)
chr3 (43-87)||(9666754-9666797)
chr3 (38-94)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 18396226 - 18395911
Alignment:
Q  1 aaagacattcaacctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaag 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396226 aaagacattcaacctaaagttacctccttgatatccaaagtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaag 18396127  T
Q  101 ccccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaatttttcga 200  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396126 ttccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaatttttcga 18396027  T
Q  201 atcaaa---------accttaaccaaaatcgcgtcacgatttttgcaaatcacggcccaatttttgtcgatattttagacaaatttcaacatttgttttc 291  Q
    ||||||         ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18396026 atcaaaacctccaaaaccttaaccaaaatctcgtcacgatttttgcaaatcgcggcccaatttttgtcgattttttagacaaatttcaacatttgttttc 18395927  T
Q  292 cttgatgatgtccatc 307  Q
    |||||| ||| |||||    
T  18395926 cttgattatggccatc 18395911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 27073692 - 27073633
Alignment:
Q  48 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagccccgag 107  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  27073692 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27073633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 27204621 - 27204680
Alignment:
Q  48 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagccccgag 107  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  27204621 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 23565313 - 23565363
Alignment:
Q  11 aacctaaagttacctcctt-gatacccaaagtttctcactcttgaagctct 60  Q
    ||||||||||||||||||| |||| || ||||||||| |||||||||||||    
T  23565313 aacctaaagttacctcctttgatatcccaagtttctctctcttgaagctct 23565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 36146678 - 36146759
Alignment:
Q  14 ctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 94  Q
    |||||||||||||||| |||  || |||||| || ||||||||||||| |  |||| ||||||||||||| |||| ||||||    
T  36146678 ctaaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 40808516 - 40808415
Alignment:
Q  1 aaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcaca 98  Q
    ||||||| |||||| ||||||||||||||| ||| | | |||||| || ||||| |||  ||||||| |||||||||||||||||  ||||||  |||||    
T  40808516 aaagacactcaaccctaaagttacctcctttgattctctaagtttatctctctttaagtcctacttataacatgaagaatgaagttctatatagagcaca 40808417  T
Q  99 ag 100  Q
    ||    
T  40808416 ag 40808415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11712245 - 11712361
Alignment:
Q  1 aaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcaca 98  Q
    ||||||| |||||| |||||||||||| || ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||  |||||||| ||||||    
T  11712245 aaagacactcaaccctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagtgcaca 11712344  T
Q  99 agccccgagaaaatcgt 115  Q
     | ||| ||||||||||    
T  11712345 tgtcccaagaaaatcgt 11712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 32902442 - 32902524
Alignment:
Q  13 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 94  Q
    |||||||||||||| | ||||  || ||||||||| |||||||||| || || ||||||||||||||||||||||||| ||||    
T  32902442 cctaaagttacctcatctgatttcccaagtttctctctcttgaagccctcctcaaaacatgaagaatgaagtcttatacaatg 32902524  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 29796578 - 29796656
Alignment:
Q  13 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 91  Q
    ||||||||||||||||| |||  |  ||||||||| ||||||||| ||| || |||||||||||||||||| ||||||||    
T  29796578 cctaaagttacctcctttgatttctcaagtttctctctcttgaag-tctcctcaaaacatgaagaatgaagccttatata 29796656  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 8153622 - 8153572
Alignment:
Q  65 aaaacatgaagaatgaagtcttatataatgcacaagccccgagaaaatcgt 115  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||||||||||    
T  8153622 aaaacatgaagaatgaagccttttataatgtacaagatccgagaaaatcgt 8153572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 3232092 - 3232145
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 91  Q
    ||||||||  ||||| | |||||||| |||||||||||||||||| ||||||||    
T  3232092 aagtttctttctcttaatgctctactcaaaacatgaagaatgaagccttatata 3232145  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 8863409 - 8863333
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagccccgagaaaatcgt 115  Q
    |||||| || |||||||||||| ||  |||||||||||||||||| |||||||| |||||| |  | |||||||||||    
T  8863409 aagtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatatagtgcacatgatctgagaaaatcgt 8863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 18141706 - 18141659
Alignment:
Q  39 agtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 87  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||    
T  18141706 agtttctctctcttgaagctctactcaaaa-atgaagaatgaagcctta 18141659  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4561020 - 4560904
Alignment:
Q  1 aaagacattcaac-ctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcaca 98  Q
    ||||||| ||||| ||||||||| ||||| ||||  || |||||| || ||||||||| | | || ||||||||||||||||||||||||| ||||||||    
T  4561020 aaagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatgaagtcttatacaatgcaca 4560921  T
Q  99 agccccgagaaaatcgt 115  Q
    || ||||||||||||||    
T  4560920 agtcccgagaaaatcgt 4560904  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 28671841 - 28671797
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaag 82  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  28671841 aagtttctctctcttgaagccctactcaaaacatgaagaatgaag 28671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 36773462 - 36773387
Alignment:
Q  13 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 87  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||||   |||| ||||||||||||||||||    
T  36773462 cctaaagttacctcctttgatttccctagtttctctctcttgaagctctatacaaaaaatgaagaatgaagtctta 36773387  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11067218 - 11067134
Alignment:
Q  1 aaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagt 83  Q
    ||||||| |||||| ||||||||||||||| |||  ||  |||||||| |||||||||| || || |||| ||||||||||||||    
T  11067218 aaagacaatcaaccataaagttacctcctttgatttccctagtttctctctcttgaagccctcctcaaaaaatgaagaatgaagt 11067134  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 19854 - 19933
Alignment:
Q  14 ctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 94  Q
    |||||||||||||||||||  || ||||||| | |||||||||| ||||| |||||| ||||||||||||| |||||||||    
T  19854 ctaaagttacctccttgatttcccaagtttcactctcttgaagc-ctactcaaaacaagaagaatgaagtcatatataatg 19933  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6677393 - 6677306
Alignment:
Q  1 aaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 87  Q
    ||||||| |||||| ||||||||||||||| ||||||| || ||||||  ||||||||| ||||| |||||||||||||||||| ||||    
T  6677393 aaagacactcaaccctaaagttacctcctttgataccctaaatttctctttcttgaagc-ctactcaaaacatgaagaatgaagcctta 6677306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 21704109 - 21704225
Alignment:
Q  38 aagtttctcactcttgaagc-tctacttaaaacatgaagaatgaagtcttatataatgcacaagccccgagaaaatcgtatcacaattttcactaattgt 136  Q
    ||||||||| |||||||||| |||||  |||||||||| |||||||||||| ||| |||||| | || |  ||||||||  | |||||||  ||||| ||    
T  21704109 aagtttctctctcttgaagcctctacacaaaacatgaaaaatgaagtcttaaatagtgcacatgtcctgtcaaaatcgtgccccaattttacctaatcgt 21704208  T
Q  137 gccacgatttcaagtta 153  Q
    |||||||||||| ||||    
T  21704209 gccacgatttcacgtta 21704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 3739397 - 3739511
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagccccgagaaaatcgtatcacaattttcactaattgtg 137  Q
    ||||||||| ||||||||  | |||| ||||||||||||||||||||||| |||||||||| | ||||  ||||||||  | | |||| |||  ||| ||    
T  3739397 aagtttctctctcttgaaa-tgtactcaaaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcgtgcctcgatttacacacattttg 3739495  T
Q  138 ccacgatttcaagtta 153  Q
    ||||||||||| ||||    
T  3739496 ccacgatttcacgtta 3739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 36463657 - 36463738
Alignment:
Q  13 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 94  Q
    |||||||||||||||| ||||  || |||||| || |||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  36463657 cctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 4587835 - 4587792
Alignment:
Q  48 ctcttgaagctctacttaaaacatgaagaatgaagtcttatata 91  Q
    ||||||||||||| || |||||||||||||||||||||| ||||    
T  4587835 ctcttgaagctctcctcaaaacatgaagaatgaagtcttttata 4587792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 43208174 - 43208207
Alignment:
Q  60 tacttaaaacatgaagaatgaagtcttatataat 93  Q
    |||| |||||||||||||||||||||||||||||    
T  43208174 tactcaaaacatgaagaatgaagtcttatataat 43208207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 8871315 - 8871390
Alignment:
Q  13 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 87  Q
    ||||||||||||| ||| |||| ||  |||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  8871315 cctaaagttacctgctttgatatccctagtttctctctcttgaagctctaccaaaaacatgaagaatgaagcctta 8871390  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 2263271 - 2263327
Alignment:
Q  43 tctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaa 99  Q
    |||| ||||||| |||||||  |||||||||||||||||| |||||||| |||||||    
T  2263271 tctctctcttgacgctctacacaaaacatgaagaatgaagccttatatagtgcacaa 2263327  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 28265821 - 28265898
Alignment:
Q  13 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttata 89  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||| |  |||| ||||||||||||| ||||||    
T  28265821 cctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaagccttata 28265898  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 25116455 - 25116407
Alignment:
Q  65 aaaacatgaagaatgaagtcttatataatgcacaagccccgagaaaatc 113  Q
    |||||||||||||||||| |||||||| |||||| | || |||||||||    
T  25116455 aaaacatgaagaatgaagacttatatagtgcacatgacctgagaaaatc 25116407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 5611451 - 5611524
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagccccgagaaaat 112  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  5611451 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 5611524  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 21156738 - 21156811
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagccccgagaaaat 112  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  21156738 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 21156811  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 40519479 - 40519532
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 91  Q
    ||||||||| |||||||||||||||| || |||||| |||||||| ||||||||    
T  40519479 aagtttctctctcttgaagctctactcaatacatgatgaatgaagccttatata 40519532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 2075350 - 2075403
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 91  Q
    ||||||||| ||||||||||   ||| |||||||||||||||||| ||||||||    
T  2075350 aagtttctctctcttgaagcctcactcaaaacatgaagaatgaagccttatata 2075403  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 9666754 - 9666797
Alignment:
Q  43 tctcactcttgaagctctacttaaaacatgaagaatgaagtctta 87  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||    
T  9666754 tctctctcttgaagctctactcaaaa-atgaagaatgaagtctta 9666797  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 37761765 - 37761820
Alignment:
Q  38 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 94  Q
    ||||| ||| |||||||||| | ||| |||||||||||||| |||||||||||||||    
T  37761765 aagttactctctcttgaagc-caactaaaaacatgaagaataaagtcttatataatg 37761820  T

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